Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(137)
  Primates
(2)
  Rodents
(77)
  Mammals
(10)
  Vertebrates
(16)
  Invertebrates
(29)
  Plants
(109)
  Bacteria
(39)
  Viruses
(1)
  Phages
(1)
  Unclassified
(13)
  All
(434)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(22)
  Tiling Array
(53)
  cDNA Array
(95)
  Oligo Array
(250)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(9)
  HT-Seq
(1)
  Other
(2)
  All
(434)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6525 Mouse NCI/ATC Mm-CGEN2.0 22k oligo array 21,921 Yokohama City University School of Medicine 2008-02-25 Advanced Technology Center Microarray Facility (NIH/NCI/CCR/ATC) Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse NCI/ATC Mm-CGEN2.0 22k oligo array,
2 GPL6340 YCU Human 4.2K version 1 4,234 Yokohama City University 2008-01-04 Department of Human Genetics, Yokohama City University Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, YCU Human 4.2K version 1,
3 GPL10538 Macrogen Human BAC clone 4K array 4,096 Yamaguchi University 2010-06-14 Macrogen Co., Korea Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Macrogen Human BAC clone 4K array, BAC clone Chip Platform table annotations based on NCBI build 36
4 GPL8012 [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 2,515 Waseda University 2008-12-29 Affymetrix Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
GeneChip in situ oligonucleotide, [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0,
5 GPL10798 Affymetrix Aspergillus nidulans 10K custom array 10,749 university of tsukuba 2010-08-12 Affymetrix Emericella nidulans
Emericella nidulans
GeneChip in situ oligonucleotide, Affymetrix Aspergillus nidulans 10K custom array,
6 GPL10720 Nimblegen S. pombe 10K 9,994 University of Tsukuba 2010-07-22 Nimblegen Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array spotted oligonucleotide, Nimblegen S. pombe 10K, Nimblegen #5543959 Euk Expr 4x72K Catlog (090408 Spom exp X4) 4977 genes 2 replicates
7 GPL13336 Affymetrix Escherichia coli full sequence array (EcFS) [EcFS_1, EcFS_2, and EcFS_3] 0 University of Tsukuba 2011-03-28 Affymetrix Escherichia coli
Escherichia coli
GeneChip in situ oligonucleotide, Affymetrix Escherichia coli full sequence array (EcFS) [EcFS_1, EcFS_2, and EcFS_3], A high-density DNA microarray (Ono et al, 2008; Suzuki et al, 2007) covering the whole genome of E. coli W3110 strain (GenoBase, http://ecoli.naist.jp/GB6/search.jsp) was utilised. Both strands of the genome were alternately tiled at single-base resolution using 21-mer perfectly matching and three mismatching probes. A library consisting of a total of 18.6 million probes was arranged on three GeneChips for microarray analysis, covering four types of probe throughout the 4.6-Mb E. coli genome. One of three GeneChips was used here for transcriptional analysis.
8 GPL7026 Human Promoter Array 1.0R - NCBI build_35 5,150,820 University of Tokyo 2008-07-07 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Human Promoter Array 1.0R - NCBI build_35, For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.
9 GPL14986 Agilent-028966 UTHORT Eustoma_EST v.1 (Feature Number version) 45,220 University of Tokyo 2011-12-09 Agilent Technologies Eustoma exaltatum subsp. russellianum
Eustoma exaltatum subsp. russellianum
Oligo Array in situ oligonucleotide, Agilent-028966 UTHORT Eustoma_EST v.1 (Feature Number version), Arrays of this design have barcodes that begin with 16028966 or 2528966. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.""" The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
10 GPL5473 Streptomyces griseus IFO13350 13K KG 13,440 University of Tokyo 2007-07-06 KakenGeneqs Streptomyces griseus
Streptomyces griseus
Oligo Array spotted oligonucleotide, Streptomyces griseus IFO13350 13K KG,
11 GPL511 Hitachi AceGene subset A 10,800 University of Tokyo 2003-09-29 Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Hitachi AceGene subset A, Spotted oligonucleotide array on glass. This set includes 10800 oligonucleotides, mostly 50-mers, designed based upon representative sequences in the human UniGene database.
12 GPL14642 Nimblegen S. pombe 10K 9,994 University of Tokyo 2011-09-30 NimbleGen Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array in situ oligonucleotide, Nimblegen S. pombe 10K, TI4896_60mer_expr.ndf TI4896_60mer_expr.ngd
13 GPL4017 TakaraBio CyanoCHIP ver1.4-ver1.6 6,352 University of Tokyo 2006-07-20 Takara Bio Inc. Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
cDNA Array spotted DNA/cDNA, TakaraBio CyanoCHIP ver1.4-ver1.6,
14 GPL16427 Filgen S. pombe 5K Array 5,432 University of Tokyo 2012-12-27 Filgen Schizosaccharomyces pombe
Schizosaccharomyces pombe
Oligo Array in situ oligonucleotide, Filgen S. pombe 5K Array,
15 GPL787 in-house cDNA microarray 1 4,608 University of Tokyo 2003-12-17 Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, in-house cDNA microarray 1, In-house cDNA microarray for digestive diseases analyses which consists of 4,300 cDNAs derived from mainly liver and gastric tissues and cell lines (Otsuka M et al.Hepatol Res. 2003;27:76-82) PCR-amplified cDNA products were mixed with nitrocellulose in dimethylsulfoxide just before printing, and then spotted onto carbodiimide-coated glass slides using an SPBIO-2000 system (Hitachi Software Engineering Co, Yokohama, Japan).
16 GPL4770 NEFU Brasicca rapa 3k v1.0 2,811 University of Tokyo 2007-01-22 NEFU(North East Forestry University, China); Kaken Genecs (Matsudo, Japan); Lab.Horticultural Science,University of Tokyo Brassica rapa subsp. rapa
Brassica rapa subsp. rapa
cDNA Array spotted DNA/cDNA, NEFU Brasicca rapa 3k v1.0,
17 GPL4595 Bando (Agilent Whole Human Genome Oligo Microarray) 37,170 University of Tokushima 2006-11-28 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Bando (Agilent Whole Human Genome Oligo Microarray), This is a custom representation of Agilent's Whole Human Genome Oligo Microarray. This platform is formatted specifically for this users normalized data and should not be referenced by other users.
18 GPL9144 DNA Chip Research AceGene Human Oligo Chip 31K 31,200 University of Occupational and Environmental Health 2009-09-02 Hitachisoft Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, DNA Chip Research AceGene Human Oligo Chip 31K,
19 GPL5329 E. coli O157 Sakai oligonucleotide DNA microarray 9,229 University of Miyazaki 2007-05-24 Molecular Gene Technics, Department of Genetic Resources Technology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan. Escherichia coli
Escherichia coli
Oligo Array spotted oligonucleotide, E. coli O157 Sakai oligonucleotide DNA microarray,
20 GPL13996 Affymetrix Aspergillus oryzae custom array 15,649 Tsukuba University 2011-07-29 Affymetrix Aspergillus oryzae RIB40
Aspergillus oryzae RIB40
GeneChip in situ oligonucleotide, Affymetrix Aspergillus oryzae custom array,
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