Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(32)		   Primates
(0)		   Rodents
(23)		   Mammals
(1)		   Vertebrates
(4)		   Invertebrates
(3)		   Plants
(47)		   Bacteria
(1)		   Viruses
(0)		   Phages
(0)		   Unclassified
(3)		   All
(114)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7)		   Tiling Array
(7)		   cDNA Array
(60)		   Oligo Array
(37)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(1)		   All
(114)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL13140 KTH Hum 34k Oligo Microarray 36,864 Uppsala University 2011-02-08 KTH Microarray Center http://www.biotech.kth.se/molbio/microarray/ Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, KTH Hum 34k Oligo Microarray,
2 GPL10579 GynObsLU Human 800 PE-associated cDNA 11,124 Uppsala University 2010-06-23 Swegene DNA Microarray resource center at Lund University Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, GynObsLU Human 800 PE-associated cDNA,
3 GPL5734 Dictyostelium discoideum small RNA sequences 2,673 Uppsala University 2007-08-13 Dictyostelium discoideum
Dictyostelium discoideum		 Other other, Dictyostelium discoideum small RNA sequences,
4 GPL7413 SWEGENE Rat 70mer oligonucleotide array version 1.0 5,614 University of Skövde 2008-10-01 Swegene DNA Microarray Resource Center, Lund, Sweden Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, SWEGENE Rat 70mer oligonucleotide array version 1.0,
5 GPL8222 Zoarces viviparus validation microarray 124,992 University of Gothenburg 2009-02-23 Department of Zoology, University of Gothenburg / Febit gmbh, Heidelberg, Germany Zoarces viviparus
Zoarces viviparus		 Oligo Array in situ oligonucleotide, Zoarces viviparus validation microarray, This microarray contains 117,316 probes used to evaluate the transcript assembly described in Kristiansson et al 2009.
6 GPL10704 University of Gothenburg Rainbow trout 15.5K microarray version 2 15,624 University of Gothenburg 2010-07-20 febit gmbh Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 2,
7 GPL8254 University of Gothenburg Rainbow trout 15.5K microarray version 1 15,624 University of Gothenburg 2009-03-05 Department of Neuroscience and Physiology, University of Gothenburg / Febit gmbh, Heidelberg, Germany Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 1,
8 GPL10422 SWEGENE H_v3.0.1 13,526 University of Gothenburg 2010-05-17 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v3.0.1,
9 GPL10423 SWEGENE H_v2.1.1 13,526 University of Gothenburg 2010-05-17 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v2.1.1,
10 GPL4462 Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4 13,056 University of Gothenburg 2006-10-18 UHN Microarray Center Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4,
11 GPL17041 Agilent-021876 Populus 4x44K [gene-level] 43,795 Umeå University 2013-04-19 Agilent Technologies Populus trichocarpa
Populus trichocarpa		 Oligo Array in situ oligonucleotide, Agilent-021876 Populus 4x44K [gene-level], whole-genome expression array
12 GPL13623 Umea Lucidea array 21,168 Umeå University 2011-05-19 Clinical bacteriology, Umeå university Pinus sylvestris,Mus musculus
Pinus sylvestris,Mus musculus		 cDNA Array spotted DNA/cDNA, Umea Lucidea array, The in-house produced cDNA-array contains 44 clones: 19 clones from mice, 4 clones from Pine (involved in photosynthesis) and 21 artificial clones from the Lucidea Universal ScoreCard (Amersham Bioscienses), where each clone was printed 480 times in 48 identically designed sub-grids.
13 GPL6596 University of Helsinki 9.6K Populus euphratica stress cDNA array 9,600 Umeå Plant Science Centre 2008-03-18 University of Helsinki Populus euphratica
Populus euphratica		 cDNA Array spotted DNA/cDNA, University of Helsinki 9.6K Populus euphratica stress cDNA array, Plant material for EST library construction: The Ein Avdat valley is located in the Negev desert in Israel at 450 m above sea level and a latitude of 30° 49' 30" N, and a longitude of 34° 46' 0" E. The average rainfall is 100 to 200 mm per year with most of the rain falling during winter time. Adult heart shaped leaves were collected from trees in areas A, B, and C for the cDNA library during the summer seasons of 2000 to 2001. Material was also harvested from young in vitro plantlets of a clone (clone B2) derived from a single tree from area B. Samples for microarray analysis were taken from areas A, B, and C and from the Ein Avdat parking lot (area P, 1 km from the valley) on 27 November 2003, and for ion, isotope and metabolite profiling on 27 November 2003 and 13 October 2004. The parking lot trees were irrigated with non saline tap water for 24 hours once a week. For normalized control libraries, leaves, shoots and roots were harvested from 8 month old P. euphratica seedlings. Seeds were obtained from the Forest Administration Division, Xinjiang Corps of Production and Construction, Urumqi, PR China. The seeds were sown on sand that had a high content of clay (6%) and germinated at 12 hours light with 250 μmol m-2 s-1 photosynthetically active radiation, 25°C, and a relative air humidity of 60% in a climate chamber (Weiss, Giessen, Germany). The seedlings were potted into soil (Fruhstorfer Erde N, Archut, Germany), transferred to a greenhouse with natural light and watered daily with Long Ashton macronutrient solution [52]. For stress treatments, leaves and roots were harvested from P. euphratica subjected to the following treatments: elevated CO2 (plants submitted to an atmosphere of 700 ppm for 60 days); different irradiance levels (plants under three different irradiance regimes corresponding to 48%, 18% and 8% external irradiance) for 60 days; drought stress (plants submitted to a 21 day cycle of drought with 5% to 3% volumetric soil humidity) before harvesting; flooding stress (plants submitted during 21 days to a complete submergence of the root system); ozone (plants submitted to 200 nl l-1 of O3 for 7 and 20 h); cold and freezing (leaves harvested from plants acclimated at 5 days of +2°C and from plants exposed to two and seven days of -2°C following the acclimation period); salt stress (leaves and xylogenic cambium harvested from plants exposed to 150 mM NaCl for 0.5 h, 1 h, 1.5 h, 2 h, 5 h, 10 h, 24 h and 48 h and roots harvested after 40 minutes, 1.5 h, 8 h and 20 h); cadmium stress (plants were stressed with 50 μM CdCl2 and roots harvested after 12, 24 and 48 h). Above text copied from Brosche et al. (2005) Genome Biology 6:R101 doi:10.1186/gb-2005-6-12-r101 PMID: 16356264
14 GPL5404 Chromosome 4 tiling array (genome release 4) 384,249 Umea University 2007-06-21 Nimblegen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Chromosome 4 tiling array (genome release 4),
15 GPL4657 Pinus taeda 5K cDNA microarray Platform 2 5,376 Swedish University of Agricultural Sciences (SLU) 2006-12-13 North Carolina State University, Forestry, Forest Biotechnology, 840 Main Campus Drive, Raleigh, NC, 27695, USA Pinus taeda
Pinus taeda		 cDNA Array spotted DNA/cDNA, Pinus taeda 5K cDNA microarray Platform 2,
16 GPL14736 Agilent-023576 Helicoverpa armigera V3 44K 43,863 Stockholm University 2011-10-14 Agilent Technologies Helicoverpa armigera
Helicoverpa armigera		 Oligo Array in situ oligonucleotide, Agilent-023576 Helicoverpa armigera V3 44K, Arrays of this design have barcodes that begin with 16023576 or 2523576. The ID column represents the Agilent Probe name.
17 GPL5345 SWEGENE H_v2.1.1 55K 55,488 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-06-01 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v2.1.1 55K,
18 GPL9077 SWEGENE_BAC_38K 41,760 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2009-08-21 SCIBLU - Swegene Centre for Integrative Biology at Lund University Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, SWEGENE_BAC_38K,
19 GPL13421 SWEGENE mouseV4_37K_withControls 37,632 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2011-04-18 Swegene DNA Microarray Resource Centre Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, SWEGENE mouseV4_37K_withControls,
20 GPL5186 SWEGENE H_v3.0.1 35K 36,288 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-05-21 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v3.0.1 35K,
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