Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,619)
  Primates
(75)
  Rodents
(1,249)
  Mammals
(201)
  Vertebrates
(255)
  Invertebrates
(845)
  Plants
(1,684)
  Bacteria
(1,270)
  Viruses
(74)
  Phages
(6)
  Unclassified
(347)
  All
(8,678)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(13)
  GeneChip
(588)
  Tiling Array
(1,094)
  cDNA Array
(1,537)
  Oligo Array
(3,252)
  Bead Array
(161)
  Protein Array
(1)
  Antibody
(15)
  RT-PCR
(109)
  HT-Seq
(1,683)
  Other
(130)
  All
(8,678)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5922 PIWI-associated piRNA in Drosophila melanogaster ovary 13,299 Yale University Stem Cell Center 2007-09-23 Drosophila melanogaster
Drosophila melanogaster
Other other, PIWI-associated piRNA in Drosophila melanogaster ovary,
2 GPL1773 LIMA_SlideA 30,000 Yale University School of Medicine 2005-01-03 Oryza sativa
Oryza sativa
MIXTURE spotted oligonucleotide, LIMA_SlideA, Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideA of the two slide sets. Platform_catalog_number: XDEN-A Platform_coating: poly L lysine Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing Platform_manufacturer: Keck Biotechnology Resource Lab at Yale Platform_support: glass slide Platform_technology: spotted oligonucleotide
3 GPL1774 LIMA_SlideB 30,000 Yale University School of Medicine 2005-01-03 Oryza sativa
Oryza sativa
MIXTURE spotted oligonucleotide, LIMA_SlideB, Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideB of the two slide sets. Platform_catalog_number: XDEN-A Platform_coating: poly L lysine Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing Platform_manufacturer: Keck Biotechnology Resource Lab at Yale Platform_support: glass slide Platform_technology: spotted oligonucleotide
4 GPL988 OAR27K 27,648 Yale University School of Medicine 2004-02-12 Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array spotted oligonucleotide, OAR27K, Arabidopsis OAR27K array is created from a set of 27K Operon 70 mer oligos. The array has a 48 pin conformation with 24 columns and 24 rows in each of 4 x 12 subarrays.
5 GPL4693 OHU28K-OI-072404-YMD.gal 27,175 Yale University School of Medicine 2006-12-21 Keck Microarray Resource at Yale Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, OHU28K-OI-072404-YMD.gal, A set of 28K Operon Version 2.1 and Version 2.1 upgrade -70 mer oligos. It has 48 pins with 24 columns and 25 rows in each subarrays. ID is Operon ID#.
6 GPL990 OHU21K 23,040 Yale University School of Medicine 2004-02-12 Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, OHU21K, Human OHU21K array is created from a set of 21K Operon Version 2.1 -70 mer oligos. The array is in 48 pin conformation. It has 24 columns and 20 rows in each of 4 x 12 subarrays.
7 GPL446 C_elegans_GHIstanfordprint_YMD2.gal.txt 21,632 Yale University School of Medicine 2003-08-26 Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, C_elegans_GHIstanfordprint_YMD2.gal.txt, Gene list for C. elegans arrays produced at Stanford and used by Reinke lab at Yale
8 GPL248 Dmel_arrayplatform 20,000 Yale University School of Medicine 2003-02-18 Drosophila melanogaster
Drosophila melanogaster
cDNA Array spotted DNA/cDNA, Dmel_arrayplatform, Spotted array using PCR fragments of approximately 95% of the genes in the D. melanogaster BDGP genome. We followed a sequence of decreasingly stringent tests to pick optimal primer pairs for the PCR fragments on the arrays. For each gene, we looked for (first) a 500b to 2kb sequence at the 3’ end and, failing this, (second) two 200b to 500b sequences in:(1) coding sequence, completely within an EST clot, and unduplicated (BLAST<=10^-4); (2) coding sequence, partially within an EST clot, unduplicated; (3) coding sequence, unduplicated; (4) exon, completely within an EST clot, unduplicated; (5) exon, partially within an EST clot, unduplicated; (6) exon, unduplicated; (7) sequence less than 2kb at the 3’ end. See above for the other details about making these arrays.
9 GPL539 C_elegans_Aprint_YMD 20,000 Yale University School of Medicine 2003-10-09 Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, C_elegans_Aprint_YMD, A print at Yale University, made 7/01
10 GPL540 elegans_Bprint_YMD.gal.txt 20,000 Yale University School of Medicine 2003-10-09 Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, elegans_Bprint_YMD.gal.txt, B print done at Yale University
11 GPL3859 elegans_Dprint_YMD 19,660 Yale University School of Medicine 2006-06-08 Gene Pix Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, elegans_Dprint_YMD, fourth print of sjj primer set 1st PCR
12 GPL3860 elegans_Fprint_YMD 19,213 Yale University School of Medicine 2006-06-08 Gene Pix Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, elegans_Fprint_YMD, 6th print of sjj primer 1st PCR
13 GPL3861 elegans_Cprint_YMD 19,213 Yale University School of Medicine 2006-06-09 Gene Pix Caenorhabditis elegans
Caenorhabditis elegans
cDNA Array spotted DNA/cDNA, elegans_Cprint_YMD, the third print run at Yale using the 1st PCR of the sjj primer set
14 GPL989 OHU16K 17,664 Yale University School of Medicine 2004-02-12 Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, OHU16K, Human OHU16K array is created from of 16K Operon Version 2.0 -70 mer oligos. The array is in 32 pin conformation with 24 columns and 22 rows and only 4 spots on the 23rd row.
15 GPL986 OMM16K 16,847 Yale University School of Medicine 2004-02-12 Gene Pix Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, OMM16K, Mouse OMM16K cDNA array is created from a set of 16K Operon 70 mer oligos. The array is in 32 pin conformation. It has 24 columns and 22 complete rows and a partial 23rd row.
16 GPL977 NIA15K 16,128 Yale University School of Medicine 2004-02-06 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, NIA15K, Mouse NIA 15K cDNA clone set was made available to us from NCI. The array is in 32 pin conformation. It has 24 columns and 21 rows in each of 4 x 8 subarrays.
17 GPL13335 Aedes aegypti whole genome array 15,959 Yale University School of Medicine 2011-03-28 NimbleGen Aedes aegypti
Aedes aegypti
Oligo Array in situ oligonucleotide, Aedes aegypti whole genome array, ORF array of the aedes aegypti genome native array description file: aaegypti_60mer_probes_rank4.filter native array description file: OID14431.ngd
18 GPL987 OMM13K 13,824 Yale University School of Medicine 2004-02-12 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, OMM13K, Mouse OMM13K cDNA array is created from a set of 13K Operon 70 mer oligos. The array is in 32 pin conformation. It has 24 columns and 18 rows in each of 4 x 8 subarrays.
19 GPL218 Drosophila_Life_Cycle 12,588 Yale University School of Medicine 2002-11-19 Drosophila melanogaster
Drosophila melanogaster
cDNA Array spotted DNA/cDNA, Drosophila_Life_Cycle, cDNA microarrays were constructed with ~9,700 Drosophila cDNA elements representing 5,081 different genes. The 5' ends were sequenced of 80% of the cDNAs to verify their identities. For more details on Materials and Methods, see http://www.sciencemag.org/cgi/data/297/5590/2270/DC1/1
20 GPL992 AR12K 12,288 Yale University School of Medicine 2004-02-12 Arabidopsis thaliana
Arabidopsis thaliana
cDNA Array spotted DNA/cDNA, AR12K, Arabidopsis AR12K is a cDNA array generated from MSU clone set. The array is in 32 pin conformation. It has 24 columns and 16 rows in each of 4 x 8 subarrays.
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