Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(12)

Primates
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Vertebrates
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Viruses
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Phages
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Unclassified
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All
(37)

SAGE NlaIII
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SAGE RsaI
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SAGE Sau3A
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MPSS
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Bead Array
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Protein Array
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Antibody
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RT-PCR
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HT-Seq
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Other
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All
(37)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL331	STv3_MMCC	5,184	Vaccine Research Institute of San Diego	2003-05-29		Salmonella enterica	cDNA Array	spotted DNA/cDNA, STv3_MMCC, Custom made Salmonella array
2	GPL335	Incyte Human UniGEM V .14	7,166	UT Southwestern Medical Center	2003-06-09		Homo sapiens	cDNA Array	spotted DNA/cDNA, Incyte Human UniGEM V .14, The UniGEM V gene expression microarray contains 7,075 sequence-verified human cDNA clones for both known genes and ESTs. UniGEM V clones include a broad spectrum of human genes whose responses can be measured for all types of experimental systems. The clones are derived from IncyteÃ¢â‚¬â„¢s set of sequence-verified cDNA clones and represent unique human genes identified in NCBIÃ¢â‚¬â„¢s UniGene database, build 46. For more information about UniGene, visit http://www.ncbi.nlm.nih.gov/UniGene/ Keywords = high density cDNA microarray
3	GPL311	CDMC_Drosophila_7k2	16,896	University of Toronto	2003-04-28		Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, CDMC_Drosophila_7k2, The CDMC_Drosophila_7K2 array is a primarily cDNA-based Drosophila melanogaster glass microarray. The array features 5,756 Berkeley Drosophila Genome Project cDNAs, 1,078 NIH Testis cDNAs (Andrews et al. 2000) and 546 gene fragments that were amplified from genomic DNA, together representing approximately 50% of the predicted genes in D. melanogaster. The array is produced by the Canadian Drosophila Microarray Centre at the University of Toronto and is available for distribution to academic labs. Keywords = CDMC Keywords = Drosophila Keywords = microarray Keywords = cDNA
4	GPL337	RNA Processing	226	University of Toronto	2003-06-12		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, RNA Processing, Home-made polylysine substrate (J. DeRisi protocol) Hedge et al., 2000 spotting, cross-linking and blocking protocol, Virtek spotter, Stealth pins (TeleChem), 8 replicates of each spot per array, Oligonucleotide spike-in controls
5	GPL334	Human 10K - Wellcome Trust Sanger Institute	9,984	University of Oxford, John Radcliffe Hospital	2003-06-06		Homo sapiens	cDNA Array	spotted DNA/cDNA, Human 10K - Wellcome Trust Sanger Institute, 10K cDNA microarray manufactured at the Microarray Facility, The Wellcome Trust Sanger Institute, Cambridge, UK.
6	GPL292	MWG Human 30k Array A	10,368	University of Modena and Reggio Emilia	2003-04-23		Homo sapiens	Oligo Array	spotted oligonucleotide, MWG Human 30k Array A, The MWG Human 30K Array is covering 29,550 human genes on three arrays (10k A/B/C). Each array consists of 9,850 oligonucleotides. The represented genes were selected from various databases (e.g. EBI, NCBI, Ensembl, GoldenPath) and kept non-redundant in MWG's proprietary CodeSeqÃ‚Â® database. Almost all genes on Array A have a known function or clearly defined protein domains.
7	GPL348	Eucalyptus xylem microarray (NCSU)	5,216	University of Florida	2003-06-29		Eucalyptus grandis,Eucalyptus tereticornis	GeneChip	spotted DNA/cDNA, Eucalyptus xylem microarray (NCSU), The cDNA microarray comprises 2608 ESTs, printed in duplicate. Each cDNA has been printed by Pin 1 and 4, or by Pin 2 and 3. 555 ESTs represent the UniGene set derived from the sequencing of a cDNA library from Eucalyptus grandis differentiating xylem generated by the Forest Biotechnology Group at NCSU (egx prefix). The remaining 2053 ESTs are from four libraries from Eucalyptus grandis leaf and root tissue and two libraries from Eucalyptus tereticornis flower tissues, kindly made available by DuPont (Scott Tingey, DuPont Crop Genetics, Newark, DE). These ESTs were selected from a collection of approximately 13,000 sequences, based on their putative function in the biogenesis of cell walls, biogenesis of the cytoskeleton, biosynthesis of phenylpropanoids, protein targeting, c-compound and carbohydrate metabolism, cell growth, signal transduction, protein transport, energy metabolism and other functions potentially associated to wood formation. The cDNA clones were amplified by PCR, purified (Millipore 96-well Multiscreen filter plates) and the quality of the amplification evaluated using agarose gels. Preparations with multiple bands and low quality amplified cDNAs were eliminated and repeated. After dilution in 50% DMSO, cDNAs were printed in duplicate on aminosilane-coated glass slides (Corning) using an Affymetrix 417 Spotter. Keywords = Eucalyptus xylem
8	GPL333	Qiagen Rat Oligonucleotide Array	4,273	University of Arizona	2003-06-04		Rattus norvegicus	Oligo Array	spotted oligonucleotide, Qiagen Rat Oligonucleotide Array, Rat genome oligo set comprises 4273 UniGene clones Keywords = Unigene Oligo Nucleotide Array
9	GPL310	Genes significantly modified in Gestational Diabetes	435	Universite Paris6	2003-04-27		Homo sapiens	cDNA Array	spotted DNA/cDNA, Genes significantly modified in Gestational Diabetes, List of the significantly up- and down-regulated genes in the diabetic placentas.
10	GPL313	Gladstone Mm_09042002 v2 mouse long oligo array	17,280	UCSF	2003-05-01		Mus musculus	Oligo Array	spotted oligonucleotide, Gladstone Mm_09042002 v2 mouse long oligo array, Spotted long oligonucleotide array produced using Operon Mouse Genome Oligo Set Version 2 probes. This set includes 16463 oligonucleotides designed based upon representative sequences in build 102 of the mouse UniGene database. 24 negative controls are included on these arrays as well as 13 controls from the Stratagene SpotReport Oligo Array Validation System. Keywords = spotted, long oligonucleotide
11	GPL347	rikDacFC6	882	The University of Tokyo	2003-06-24	Affymetrix	Saccharomyces cerevisiae	Tiling Array	in situ oligonucleotide, rikDacFC6, Highdensity Yeast Chromosome VI tiling oligo-nucleotide array which can analyze chromosome VI at 300bp resolution. Produced by Affymetrix. Can be purchased directly from Affymetrix. Product name rikDACF. P/N 510636. Keywords = chromosome VI tiling array
12	GPL317	SHCO	43,008	Stanford University	2003-05-07		Homo sapiens	cDNA Array	spotted DNA/cDNA, SHCO, Tip Configuration: Standard 48 tip Columns per Sector: 30 Rows per Sector: 30 Column Spacing: 146 Row Spacing: 146
13	GPL318	SHCZ	43,008	Stanford University	2003-05-07		Homo sapiens	cDNA Array	spotted DNA/cDNA, SHCZ, Tip Configuration: Standard 48 tip Columns per Sector: 30 Rows per Sector: 30 Column Spacing: 146 Row Spacing: 146
14	GPL319	SHDJ	43,008	Stanford University	2003-05-07		Homo sapiens	cDNA Array	spotted DNA/cDNA, SHDJ, Tip Configuration: Standard 48 tip Columns per Sector: 30 Rows per Sector: 30 Column Spacing: 146 Row Spacing: 146
15	GPL289	Segal_3	6,111	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_3, Used to examine wild type and ypl230w mutant under stationary phase.
16	GPL287	Segal_1	5,993	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_1, Used to examine wild type and kin82 mutant under heat shock.
17	GPL288	Segal_2	5,832	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_2, Used to examine wild type and ppt1 mutant under hypo-osmotic shock.
18	GPL321	M20K (Incyte mouse release 1.0 and Unigene1)	21,168	St. Jude Children's Research Hospital	2003-05-14		Mus musculus	cDNA Array	spotted DNA/cDNA, M20K (Incyte mouse release 1.0 and Unigene1), The M20K microarray includes 18,330 cDNA mouse clones from the Incyte mouse release 1.0 and Unigene 1 collections. The PCR amplified cDNA inserts were either obtained from Incyte or were amplified from replica plate cultures, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA). Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.
19	GPL324	M3 (NIA Mouse 15K Clone Set)	17,329	St. Jude Children's Research Hospital	2003-05-14		Mus musculus	cDNA Array	spotted DNA/cDNA, M3 (NIA Mouse 15K Clone Set), The M3 microarray includes cDNAs from the NIA Mouse 15K cDNA clone collection. NIA Mouse 15K is derived from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others. The cDNA inserts were amplified from replica plate cultures by PCR, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA). Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.
20	GPL323	Ret13K (BMAP mouse Retinal library)	17,328	St. Jude Children's Research Hospital	2003-05-14		Mus musculus	cDNA Array	spotted DNA/cDNA, Ret13K (BMAP mouse Retinal library), The Ret13K microarray includes 12,243 mouse clones including BMAP mouse retinal clones and 220 clones from the Incyte mouse unigene 1 collection. The cDNA inserts were amplified from replica plate cultures by PCR, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA). Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.

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