Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(63,220)		   blood
(169,267)		   connective
(49,492)		   reproductive
(38,618)		   muscular
(24,498)		   digestive
(31,399)		   liver
(51,405)		   lung
(30,850)		   urinary
(18,692)		   endo/exo-crine
(55,952)		   embryo
(18,082)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,764)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,128)		   pooled
(52,306)		   unclassified
(261,596)		   all
(898,944)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM416758 SW480 560,242 Whitehead Institute 2009-06-12 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon SW480
2 GSM538526 BGA140 335,088 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine small intestine/d3 hc
3 GSM538587 BGA76 306,119 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine duodenum
4 GSM538588 BGA77 295,305 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine ileum
5 GSM538580 BGA64 289,189 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine jejunum
6 GSM538590 BGA79 267,915 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine jejunum
7 GSM538573 BGA57 259,917 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 colon cecum
8 GSM538581 BGA65 242,919 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine large intestine
9 GSM538551 BGA25 236,113 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 stomach stomach omasum
10 GSM538578 BGA62 220,845 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine ileum
11 GSM538527 BGA142 202,809 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine small intestine/d7 hc
12 GSM538579 BGA63 182,386 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 intestine duodenum
13 GSM378628 HCT116 rep1 Msp I MethylSeq 90,612 Stanford U 2009-03-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon HCT116
14 GSM378629 HCT116 rep2 Msp I MethylSeq 90,612 Stanford U 2009-03-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon HCT116
15 GSM378630 HCT116 rep3 Msp I MethylSeq 90,612 Stanford U 2009-03-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon HCT116
16 GSM378631 HCT116 meDIPSeq data 90,612 Stanford U 2009-03-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon HCT116
17 GSM696103 SNU484-LPCX 387 Lee Gil Ya cancer and diabets institute 2011-03-22 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 stomach Gastric cancer cell line, SNU484-LPCX
18 GSM696104 SNU484-Smad3 311 Lee Gil Ya cancer and diabets institute 2011-03-22 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 stomach Gastric cancer cell line, SNU484-Smad3
19 GSM1006888 UT-A_ChipSeq_Colon_OC_Input 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon Colon_OC
20 GSM1010756 HudsonAlpha_ChipSeq_HCT-116_FOSL1_(SC-183)_v042211.1 0 UCSC ENCODE DCC 2012-09-28 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 colon HCT-116
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