Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(16,283)

Phages
(0)

All
(31,365)

SAGE Sau3A
(0)

Protein Array
(0)

Antibody
(0)

All
(31,365)

endo/exo-crine
(1,090)

embryo
(971)

adult aerial structure
(1,248)

young aerial structure
(418)

root
(391)

meristem/growing tissue
(349)

flower/sexual organ
(345)

seed/fruit/grain
(169)

pooled
(775)

unclassified
(9,819)

all
(31,365)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM298710	SMAD2/3 localization in TGF-beta-treated HaCaT cells	5,111,669	University of Tokyo	2008-06-17	[GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026)	genomic	Homo sapiens	unclassified	source_name:Smad2_3_ChIP_DNA Input_DNA title:SMAD2/3 localization in TGF-beta-treated HaCaT cells description:HaCaT cells treated with TGF-beta3 were used for Smad2/3 ChIP. Sheared input genomic DNA was used for control. Both Smad2/3 ChIP and input samples were prepared as biological duplicate.
2	GSM866991	Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h	5,111,669	University of Tokyo	2012-01-26	[GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026)	genomic	Homo sapiens	stomach	Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h
3	GSM183500	ChIP-Chip with anti-Flag antibody, replicate 1 of 2.	3,214,785	RIKEN	2007-04-22	[Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923)	genomic	Drosophila melanogaster	unclassified	source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-Flag antibody, replicate 1 of 2. description:Data from the chromatin immunoprecipitation with anti-Flag antibody on Drosophila genome tiling array. Replicate no.1 of 2 (Independent sampling).
4	GSM183501	ChIP-Chip with anti-Flag antibody, replicate 2 of 2.	3,214,785	RIKEN	2007-04-22	[Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923)	genomic	Drosophila melanogaster	unclassified	source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-Flag antibody, replicate 2 of 2. description:Data from the chromatin immunoprecipitation with anti-Flag antibody on Drosophila genome tiling array. Replicate no. 2 of 2 (Independent sampling).
5	GSM183502	ChIP-Chip with anti-V5 antibody, replicate 1 of 2.	3,214,785	RIKEN	2007-04-22	[Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923)	genomic	Drosophila melanogaster	unclassified	source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-V5 antibody, replicate 1 of 2. description:Data from the chromatin immunoprecipitation with anti-V5 antibody on Drosophila genome tiling array. Replicate no.1 of 2 (Independent sampling).
6	GSM183503	ChIP-Chip with anti-V5 antibody, replicate 2 of 2.	3,214,785	RIKEN	2007-04-22	[Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923)	genomic	Drosophila melanogaster	unclassified	source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-V5 antibody, replicate 2 of 2. description:Data from the chromatin immunoprecipitation with anti-V5 antibody on Drosophila genome tiling array. Replicate no.2 of 2 (Independent sampling).
7	GSM243197	hScc1 localization in G2 (Whole Genome #8)	3,138,510	The University of Tokyo	2007-11-15	[Tiling Array] GeneChip Human Tiling 1.0R Array set (8) - NCBI build 36 (GPL6138)	genomic	Homo sapiens	unclassified	source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 localization in G2 (Whole Genome #8) description:hScc1 distribution in G2 phase. Array 8 of 14.
8	GSM243242	CTCF localization in G2 (Whole Genome #8)	3,138,510	The University of Tokyo	2007-11-15	[Tiling Array] GeneChip Human Tiling 1.0R Array set (8) - NCBI build 36 (GPL6138)	genomic	Homo sapiens	unclassified	source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:CTCF localization in G2 (Whole Genome #8) description:CTCF distribution in G2 phase. Array 8 of 14. For WCE fraction, the same file as we used for the analysis of hScc1 distribution were used.
9	GSM212916	H3K9Ac ChIP HRG 0hr, chip 10 of 14	3,101,727	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
10	GSM212917	H3K9Ac ChIP HRG 2hr, chip 10 of 14	3,101,727	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
11	GSM212944	RNA HRG 0hr, chip 10 of 14	3,101,727	RIKEN	2007-07-25	[Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661)	RNA	Homo sapiens	breast	RNA, HRG 0hr, MCF-7
12	GSM212945	RNA HRG 2hr, chip 10 of 14	3,101,727	RIKEN	2007-07-25	[Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661)	RNA	Homo sapiens	breast	RNA, HRG 2hr, MCF-7
13	GSM212902	H3K9Ac ChIP HRG 0hr, chip 03 of 14	3,101,719	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
14	GSM212903	H3K9Ac ChIP HRG 2hr, chip 03 of 14	3,101,719	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
15	GSM212930	RNA HRG 0hr, chip 03 of 14	3,101,719	RIKEN	2007-07-25	[Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652)	RNA	Homo sapiens	breast	RNA, HRG 0hr, MCF-7
16	GSM212931	RNA HRG 2hr, chip 03 of 14	3,101,719	RIKEN	2007-07-25	[Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652)	RNA	Homo sapiens	breast	RNA, HRG 2hr, MCF-7
17	GSM243198	hScc1 localization in G2 (Whole Genome #9)	3,101,522	The University of Tokyo	2007-11-15	[Tiling Array] GeneChip Human Tiling 1.0R Array set (9) - NCBI build 36 (GPL6139)	genomic	Homo sapiens	unclassified	source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 localization in G2 (Whole Genome #9) description:hScc1 distribution in G2 phase. Array 9 of 14.
18	GSM243241	CTCF localization in G2 (Whole Genome #9)	3,101,522	The University of Tokyo	2007-11-15	[Tiling Array] GeneChip Human Tiling 1.0R Array set (9) - NCBI build 36 (GPL6139)	genomic	Homo sapiens	unclassified	source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:CTCF localization in G2 (Whole Genome #9) description:CTCF distribution in G2 phase. Array 9 of 14. For WCE fraction, the same data as we used for the analyses of hScc1 were used.
19	GSM212904	H3K9Ac ChIP HRG 0hr, chip 04 of 14	3,101,389	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
20	GSM212905	H3K9Ac ChIP HRG 2hr, chip 04 of 14	3,101,389	RIKEN	2007-07-24	[Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654)	genomic	Homo sapiens	breast	H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7

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