Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(0)
  Primates
(0)
  Rodents
(0)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(69)
  Bacteria
(0)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(69)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(43)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(26)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(69)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(17)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(52)
  all
(69)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM951110 T (‒P), biological rep1 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:transgenic IR64 rice with 35S::OsPSTOL1_ P-deficient soil title:T (‒P), biological rep1 description:Gene expression data from transgenic rice grown in P-deficient soil Gamuyao_A
2 GSM951111 T (‒P), biological rep2 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:transgenic IR64 rice with 35S::OsPSTOL1_ P-deficient soil title:T (‒P), biological rep2 description:Gene expression data from transgenic rice grown in P-deficient soil Gamuyao_B
3 GSM951112 NT (‒P), biological rep1 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:non-transgenic IR64 rice_P-deficient soil title:NT (‒P), biological rep1 description:Gene expression data from non-transgenic rice grown in P-deficient soil Gamuyao_C
4 GSM951113 NT (‒P), biological rep2 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:non-transgenic IR64 rice_P-deficient soil title:NT (‒P), biological rep2 description:Gene expression data from non-transgenic rice grown in P-deficient soil Gamuyao_D
5 GSM951114 T (+P), biological rep1 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:transgenic IR64 rice with 35S::OsPSTOL1_P-fertilized soil title:T (+P), biological rep1 description:Gene expression data from transgenic rice grown in P-fertilized soil Gamuyao_E
6 GSM951115 T (+P), biological rep2 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:transgenic IR64 rice with 35S::OsPSTOL1_P-fertilized soil title:T (+P), biological rep2 description:Gene expression data from transgenic rice grown in P-fertilized soil Gamuyao_F
7 GSM951116 NT (+P), biological rep1 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:non-transgenic IR64 rice_P-fertilized soil title:NT (+P), biological rep1 description:Gene expression data from non-transgenic rice grown in P-fertilized soil Gamuyao_G
8 GSM951117 NT (+P), biological rep2 57,381 International Rice Research Institute 2012-06-21 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa
unclassified source_name:non-transgenic IR64 rice_P-fertilized soil title:NT (+P), biological rep2 description:Gene expression data from non-transgenic rice grown in P-fertilized soil Gamuyao_H
9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - d1 45 day old leaf tissue - wtcheck
10 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - d256 45 day old leaf tissue - wtcheck
11 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - d1137 45 day old leaf tissue - wtcheck
12 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - d2943 45 day old leaf tissue - wtcheck
13 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g282 45 day old leaf tissue - wtcheck
14 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g650 45 day old leaf tissue - wtcheck
15 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g6485 45 day old leaf tissue - wtcheck
16 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g6489 45 day old leaf tissue - wtcheck
17 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g6603 45 day old leaf tissue - wtcheck
18 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g6686 45 day old leaf tissue - wtcheck
19 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g6728 45 day old leaf tissue - wtcheck
20 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 57,194 International Rice Research Institute 2009-03-03 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) genomic Oryza sativa Indica Group
Oryza sativa Indica Group
leaf 45 day old leaf tissue - g7534 45 day old leaf tissue - wtcheck
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