Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,788)
  Primates
(8)
  Rodents
(4,735)
  Mammals
(255)
  Vertebrates
(194)
  Invertebrates
(715)
  Plants
(1,746)
  Bacteria
(1,130)
  Viruses
(0)
  Phages
(41)
  Unclassified
(10)
  All
(12,622)
 
  SAGE NlaIII
(36)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(4,894)
  Tiling Array
(395)
  cDNA Array
(4,739)
  Oligo Array
(2,520)
  Bead Array
(30)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(4)
  All
(12,622)
 
  brain
(1,115)
  blood
(1,679)
  connective
(754)
  reproductive
(639)
  muscular
(802)
  digestive
(292)
  liver
(416)
  lung
(355)
  urinary
(803)
  endo/exo-crine
(902)
  embryo
(316)
  adult aerial structure
(165)
  young aerial structure
(66)
  root
(0)
  meristem/growing tissue
(18)
  flower/sexual organ
(68)
  seed/fruit/grain
(0)
  pooled
(794)
  unclassified
(3,438)
  all
(12,622)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM66995 Heart, Muscle 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Heart, Muscle
2 GSM66996 Liver (Mouse Exons) 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
liver/hepato Pool 2: Liver (2 ug)
3 GSM66997 Whole brain, Cerebellum, Olfactory bulb 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 3: Whole brain (1.5 ug), Cerebellum (0.48 ug), Olfactory bulb (0.15 ug)
4 GSM66998 Colon, Intestine 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 4: Colon (0.96 ug), Intestine (1.04 ug)
5 GSM67003 Testis, Epididymis 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 5: Testis (3 ug), Epididymis (0.4 ug)
6 GSM67004 Femur, Knee, Teeth 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
bone Pool 6: Femur (0.9 ug), Knee (0.4 ug), Calvaria (0.06 ug), Teeth+mandible (1.3 ug), Teeth (0.4 ug)
7 GSM67005 Embryo, ES 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
cerebrum Pool 7: 15 day Embryo (1.3 ug), 12.5 day Embryo (12.5 ug), 9.5 day Embryo (0.31 ug), 14.5 day Embryo head (0.25 ug), ES cells (0.24 ug)
8 GSM67006 Digit, Tongue, Trachea 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 8: Digit (1.3 ug), Tongue (0.6 ug), Trachea (0.15 ug)
9 GSM67007 Pancreas, Glands 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 9: Pancreas (1 ug), Mammary gland (0.9 ug), Adrenal gland (0.25 ug), Prostate gland (0.25 ug)
10 GSM67008 Salivary, Lymph 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
lymphnode Pool 10: Salivary gland (1.26 ug), Lymph node (0.74 ug)
11 GSM67009 Placenta, 3 days 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
placenta Pool 11: 12.5 day Placenta (1.15 ug), 9.5 day Placenta (0.5 ug), 15 day Placenta (0.35 ug)
12 GSM67010 Lung, Kidney 837,251 University of Toronto 2005-08-03 [Oligo Array] Mouse Exons (GPL2707) RNA Mus musculus
Mus musculus
pooled Pool 12: Lung (1 ug), Kidney (1 ug), Adipose (1 ug), Bladder (0.05 ug)
13 GSM66596 H3_#1/Total_2 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone H3 from Drosophila S2 cells Input DNA title:H3_#1/Total_2 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
14 GSM66597 H3_#2/Total_2 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone H3 from Drosophila S2 cells Input DNA title:H3_#2/Total_2 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
15 GSM66599 H33dN_2/TOTAL_3 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone H3.3 core region from Drosophila S2 cells Input DNA title:H33dN_2/TOTAL_3 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
16 GSM66601 H33dN_3/TOTAL_4 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone H3.3 core region from Drosophila S2 cells Input DNA title:H33dN_3/TOTAL_4 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
17 GSM66602 H33FL_1/TOTAL_8 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone 3.3 region from Drosophila S2 cells Input DNA title:H33FL_1/TOTAL_8 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
18 GSM66603 H33FL_2/TOTAL_9 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone 3.3 region from Drosophila S2 cells Input DNA title:H33FL_2/TOTAL_9 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
19 GSM66604 H33FL_1-2/H3_2-2 388,340 Fred Hutchinson Cancer Research Center 2005-07-28 [Tiling Array] Tiling design for D. melanogaster (GPL2678) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Chromatin affinity-purified DNA with tagged histone H3.3 region from Drosophila S2 cells Chromatin affinity-purified DNA with tagged histone H3 region from Drosophila S2 cells title:H33FL_1-2/H3_2-2 description:Histones were identically tagged at their N-termini with biotin ligase recognition peptide (BLRP) (de Boer, E. et al. Proc Natl Acad Sci U S A 100, 7480-5 (2003), and Beckett, D. et al. Protein Sci 8, 921-9 (1999)) and expressed together with E. coli biotin ligase in Drosophila S2 cells. Nuclei were prepared as described (McKittrick, E., et al., Proc. Natl. Acad. Sci. USA 101, 1525-1530 (2004).), and treated with micrococcal nuclease (MNase) to digest chromatin to yield mostly mononucleosomes. Chromatin was extracted (input) using a modification of the procedure of Blower, M.D., et al. (Developmental Cell 2, 319-330 (2002)). Biotinylated histone-containing nucleosome particles (pull-down) were purified and DNA was extracted from both input and pull-down fraction for microarray analysis. DNA from input (3 ug) and pull-down (4 ug) was provided to NimbleGen Systems for differential labelling by random priming with Cy3- or Cy5 and hybridization to oligonucleotide arrays. For each experiment, input and pull-down channel signal intensities and scaled log2(ratios) were provided by NimbleGen Systems.
20 GSM66737 stem_mutant35S31-5_rep1 388,340 USDA Forest Service 2005-07-28 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
other adult aerial structure Apical 10cm of stems of greenhouse grown plants.
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