Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(26,629)		   Primates
(89)		   Rodents
(7,361)		   Mammals
(611)		   Vertebrates
(768)		   Invertebrates
(2,131)		   Plants
(2,683)		   Bacteria
(1,241)		   Viruses
(236)		   Phages
(0)		   Unclassified
(653)		   All
(42,486)		  
  SAGE NlaIII
(2)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(16,226)		   Tiling Array
(956)		   cDNA Array
(2,312)		   Oligo Array
(11,028)		   Bead Array
(8,275)		   Protein Array
(0)		   Antibody
(134)		   RT-PCR
(260)		   HT-Seq
(2,800)		   Other
(493)		   All
(42,486)		  
  brain
(2,684)		   blood
(9,143)		   connective
(2,936)		   reproductive
(1,933)		   muscular
(739)		   digestive
(2,560)		   liver
(1,470)		   lung
(1,005)		   urinary
(1,138)		   endo/exo-crine
(2,559)		   embryo
(1,097)		   adult aerial structure
(524)		   young aerial structure
(172)		   root
(153)		   meristem/growing tissue
(29)		   flower/sexual organ
(142)		   seed/fruit/grain
(197)		   pooled
(1,541)		   unclassified
(12,464)		   all
(42,486)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM678420 Small RNA from 4 pooled macaque principal and basal cells 9,265,352 PICB 2011-02-22 [HT Sequencing] Illumina Genome Analyzer II (Macaca mulatta) (GPL9160) SRA Macaca mulatta
Macaca mulatta		 skin macaque principal and basal cells of epididymis
2 GSM678422 Small RNA from mouse epididymis 7,361,966 PICB 2011-02-22 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 skin mouse epididymis
3 GSM678421 Small RNA from 4 pooled macaque peritubular tissues 6,634,347 PICB 2011-02-22 [HT Sequencing] Illumina Genome Analyzer II (Macaca mulatta) (GPL9160) SRA Macaca mulatta
Macaca mulatta		 skin macaque peritubular tissues of epididymis
4 GSM652439 human_T12_RNA-seq 6,293,859 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, IFN-alpha, 12 hrs
5 GSM678415 Small RNA from macaque testis 5,567,852 PICB 2011-02-22 [HT Sequencing] Illumina Genome Analyzer II (Macaca mulatta) (GPL9160) SRA Macaca mulatta
Macaca mulatta		 testis macaque testis
6 GSM648139 Oryza sativa L. ssp. japonica zhonghua11_HT panicle sRNA 5,530,539 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
7 GSM648141 Oryza sativa L. ssp. japonica zhonghua11_LT panicle sRNA 5,321,168 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
8 GSM652442 mouse_TG_RNA-seq 5,077,268 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thyroid/parathyroid pool of thyroid gland tissues, IFN-alpha transgenic
9 GSM648140 Oryza sativa L. ssp. japonica rdr701-1_HT panicle sRNA 4,952,454 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
10 GSM652440 human_T24_RNA-seq 4,673,554 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, IFN-alpha, 24 hrs
11 GSM648142 Oryza sativa L. ssp. japonica rdr701-1_LT panicle sRNA 4,621,649 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
12 GSM687318 N28_initial_library 4,595,971 UMass Medical School 2011-03-08 [HT Sequencing] Illumina Genome Analyzer IIx (synthetic construct) (GPL11631) SRA synthetic construct
synthetic construct		 unclassified source_name:B1H randomized library title:N28_initial_library
13 GSM652441 mouse_WT_RNA-seq 3,793,500 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 thyroid/parathyroid pool of thyroid gland tissues, wild type
14 GSM686040 Calli_Differentiated 3,641,248 Institut de Génétique et Microbiologie 2011-03-04 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 unclassified source_name:Differentiated calli title:Calli_Differentiated
15 GSM686039 Calli_Undifferentiated 3,499,831 Institut de Génétique et Microbiologie 2011-03-04 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 unclassified source_name:Undifferentiated calli title:Calli_Undifferentiated
16 GSM652438 human_T0_RNA-seq 3,261,581 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, untreated
17 GSM696169 NA18980 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 2,450,000 The Hospital for Sick Children 2011-03-22 [Bead Array] Illumina HumanOmni2.5-Quad BeadChip (GPL13314) genomic Homo sapiens
Homo sapiens		 unclassified source_name:NA18980 title:NA18980 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 description:Genomic DNA extracted was analyzed using Illumina's BeadStudio software
18 GSM696170 NA18576 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 2,450,000 The Hospital for Sick Children 2011-03-22 [Bead Array] Illumina HumanOmni2.5-Quad BeadChip (GPL13314) genomic Homo sapiens
Homo sapiens		 unclassified source_name:NA18576 title:NA18576 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 description:Genomic DNA extracted was analyzed using Illumina's BeadStudio software
19 GSM696171 NA15510 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 2,450,000 The Hospital for Sick Children 2011-03-22 [Bead Array] Illumina HumanOmni2.5-Quad BeadChip (GPL13314) genomic Homo sapiens
Homo sapiens		 unclassified source_name:NA15510 title:NA15510 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 description:Genomic DNA extracted was analyzed using Illumina's BeadStudio software
20 GSM696172 NA12239 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 2,450,000 The Hospital for Sick Children 2011-03-22 [Bead Array] Illumina HumanOmni2.5-Quad BeadChip (GPL13314) genomic Homo sapiens
Homo sapiens		 unclassified source_name:NA12239 title:NA12239 rep1 genotyping at TCAG (HumanOmni2.5-Quad) rev 2 description:Genomic DNA extracted was analyzed using Illumina's BeadStudio software
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