Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(63,220)		   blood
(169,267)		   connective
(49,492)		   reproductive
(38,618)		   muscular
(24,498)		   digestive
(31,399)		   liver
(51,405)		   lung
(30,850)		   urinary
(18,692)		   endo/exo-crine
(55,952)		   embryo
(18,082)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,764)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,128)		   pooled
(52,306)		   unclassified
(261,596)		   all
(898,944)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1 Foreskin Fibroblasts 5,494 Institute of Medical Microbiology, University of Bern 2000-09-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin mRNA of untreated foreskin fibroblasts
2 GSM10 female b 3,456 NIDDK, NIH 2000-10-18 [cDNA Array] Dmel.testis.1.0 (GPL5) RNA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:y w[67c1] female title:female b description:Whole adult male minus (12-24 hours post-eclosion) Drosophila melanogaster of the genotype y w[67c1].
3 GSM100 Renal cell carcinoma: rccc-5, tumor 2 (part 1 of 2) 36,864 German Cancer Research Center 2001-07-19 [cDNA Array] Human Unigene I, part 1 (GPL9) RNA Homo sapiens
Homo sapiens		 kidney renal clear cell carcinoma (primary tumor)
4 GSM1000 Sporulation t30min 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t30min title:Sporulation t30min description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo30
5 GSM10000 Rat fatty liver6 4,502 University of Cambridge 2003-09-15 [GeneChip] [RG_U34A] Affymetrix Rat Genome U34 Array (GPL85) RNA Rattus norvegicus
Rattus norvegicus		 liver/hepato Kyoto Rat liver tissue following animal exposure to orotic acid for 14 days
6 GSM100000 ORMES6_biological repC 52,865 ONPRC 2006-03-10 [GeneChip] [Rhesus] Affymetrix Rhesus Macaque Genome Array (GPL3535) RNA Macaca mulatta
Macaca mulatta		 embryo Rhesus monkey embryonic stem cell lines ORMES6C
7 GSM100001 ORMES7 52,862 ONPRC 2006-03-10 [GeneChip] [Rhesus] Affymetrix Rhesus Macaque Genome Array (GPL3535) RNA Macaca mulatta
Macaca mulatta		 embryo Rhesus monkey embryonic stem cell lines ORMES7
8 GSM100002 ORMES9 52,862 ONPRC 2006-03-10 [GeneChip] [Rhesus] Affymetrix Rhesus Macaque Genome Array (GPL3535) RNA Macaca mulatta
Macaca mulatta		 embryo Rhesus monkey embryonic stem cell lines ORMES9
9 GSM100003 TLR7 gene duplication accelerates autoimmunity and promotes nucleolar-specific B cells (sample2) 17,664 NIH 2006-03-10 [Oligo Array] NIAID - Mmbe (GPL1057) RNA Mus musculus
Mus musculus		 pooled Follicular B cells from spleen, fresh Isolation
10 GSM100004 Somatic fibroblasts 52,865 ONPRC 2006-03-10 [GeneChip] [Rhesus] Affymetrix Rhesus Macaque Genome Array (GPL3535) RNA Macaca mulatta
Macaca mulatta		 skin Adult somatic skin fibroblasts
11 GSM100005 TLR7 gene duplication accelerates autoimmunity and promotes nucleolar-specific B cells (sample3) 17,664 NIH 2006-03-10 [Oligo Array] NIAID - Mmbe (GPL1057) RNA Mus musculus
Mus musculus		 pooled Follicular B cells from spleen, fresh Isolation
12 GSM100006 TLR7 gene duplication accelerates autoimmunity and promotes nucleolar-specific B cells (sample4) 17,664 NIH 2006-03-10 [Oligo Array] NIAID - Mmbe (GPL1057) RNA Mus musculus
Mus musculus		 pooled Follicular B cells from spleen, fresh Isolation
13 GSM1000063 LICR_ChipSeq_Kidney_H3K36me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 kidney Kidney
14 GSM1000064 LICR_ChipSeq_SmIntestine_H3K27me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 unclassified source_name:SmIntestine title:LICR_ChipSeq_SmIntestine_H3K27me3_adult-8wks
15 GSM1000065 LICR_ChipSeq_BMDM_H3K4me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 unclassified source_name:BMDM title:LICR_ChipSeq_BMDM_H3K4me3_adult-8wks
16 GSM1000066 LICR_ChipSeq_BMDM_H3K4me1_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 unclassified source_name:BMDM title:LICR_ChipSeq_BMDM_H3K4me1_adult-8wks
17 GSM1000067 LICR_ChipSeq_Testis_H3K36me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 testis Testis
18 GSM1000068 LICR_ChipSeq_Thymus_H3K36me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 thymus Thymus
19 GSM1000069 LICR_ChipSeq_SmIntestine_H3K36me3_adult-8wks 0 UCSC ENCODE DCC 2012-09-10 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 unclassified source_name:SmIntestine title:LICR_ChipSeq_SmIntestine_H3K36me3_adult-8wks
20 GSM100007 NPC_Ref_rep1 22,315 Merck Sharp & Dohme 2006-03-12 [Oligo Array] Rosetta/Merck Mouse 25K v1.9 Array (GPL3542) RNA Mus musculus
Mus musculus		 unclassified source_name:Mouse SVZ NPC Reference Pool Mouse SVZ NPC Reference Replicate 1 title:NPC_Ref_rep1 description:'Self-Ref' Sample: Single member of reference (undifferentiated) sample hybridised against a pool of 3 such samples
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