Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(27,231)		   Primates
(191)		   Rodents
(7,993)		   Mammals
(1,491)		   Vertebrates
(704)		   Invertebrates
(853)		   Plants
(4,347)		   Bacteria
(2,475)		   Viruses
(10)		   Phages
(0)		   Unclassified
(91)		   All
(45,412)		  
  SAGE NlaIII
(19)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(52)		   GeneChip
(20,292)		   Tiling Array
(656)		   cDNA Array
(7,184)		   Oligo Array
(11,589)		   Bead Array
(4,460)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(272)		   HT-Seq
(875)		   Other
(13)		   All
(45,412)		  
  brain
(3,049)		   blood
(12,076)		   connective
(1,884)		   reproductive
(1,426)		   muscular
(1,041)		   digestive
(1,718)		   liver
(1,696)		   lung
(1,057)		   urinary
(1,018)		   endo/exo-crine
(2,083)		   embryo
(1,091)		   adult aerial structure
(646)		   young aerial structure
(413)		   root
(413)		   meristem/growing tissue
(85)		   flower/sexual organ
(74)		   seed/fruit/grain
(120)		   pooled
(3,664)		   unclassified
(11,858)		   all
(45,412)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM301562 HEK Input DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep1 description:raw sequence 070710_4
2 GSM301564 HEK Input DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep2 description:raw sequence 070929_5
3 GSM301565 HEK Input DNA rep3 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep3 description:raw sequence 070929_6
4 GSM301566 HEK ChIP DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep1 description:raw sequence 070824_2
5 GSM301567 HEK ChIP DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep2 description:raw sequence 070929_4
6 GSM301568 HEK293T cells rep1 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 kidney Human embryonic kidney cells
7 GSM301581 HEK293T cells rep2 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 kidney Human embryonic kidney cells
8 GSM301582 B cells rep1 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lymphnode Ramos lymphoma B cells
9 GSM301583 B cells rep2 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lymphnode Ramos lymphoma B cells
10 GSM427332 Illumina sequencing of small RNAs from post-gastrulation C. elegans embryos 6,175,141 Max-Delbrueck Centrum Berlin-Buch 2009-07-14 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo Post-gastrulation embryo
11 GSM815532 control 3,158,255 Max Planck Institute for Developmental Biology 2011-10-12 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Col-0 control title:control description:small RNA profiling
12 GSM769509 control, cytoplasmic fraction 2,614,999 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:control, cytoplasmic fraction description:cytoplasmic fraction was isolated using PARIS kit (Ambion)
13 GSM815534 mir164a_c24 2,335,130 Max Planck Institute for Developmental Biology 2011-10-12 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Col-0 35S::MIR164AC24 title:mir164a_c24 description:small RNA profiling
14 GSM427301 Illumina sequencing of small RNAs from one cell stage C. elegans embryos 2,297,398 Max-Delbrueck Centrum Berlin-Buch 2009-07-14 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo One cell embryo
15 GSM815533 mir164a_col-0 2,100,806 Max Planck Institute for Developmental Biology 2011-10-12 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Col-0 35S::MIR164ACol-0 title:mir164a_col-0 description:small RNA profiling
16 GSM769510 control, total cell content 1,921,862 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:control, total cell content description:total cell content of unperturbed cells was sequenced
17 GSM769511 Dicer knock-down, cytoplasmic fraction 1,672,110 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:Dicer knock-down, cytoplasmic fraction description:Dicer mRNA was knocked down using siDicer, cytoplasmic fraction was isolated using PARIS kit (Ambion)
18 GSM427344 Illumina sequencing of small RNAs from older, fixed C. elegans embryos 1,418,007 Max-Delbrueck Centrum Berlin-Buch 2009-07-14 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo Older embryos (fixed)
19 GSM769512 Dicer knock-down, total cell content 1,329,003 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:Dicer knock-down, total cell content description:Dicer mRNA was knocked down using siDicer, total cell content
20 GSM427345 Illumina sequencing of small RNAs from living one cell C. elegans embryos 1,073,508 Max-Delbrueck Centrum Berlin-Buch 2009-07-14 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo Living one-cell embryo
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