Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(24,127)		   Primates
(96)		   Rodents
(5,988)		   Mammals
(882)		   Vertebrates
(516)		   Invertebrates
(2,100)		   Plants
(2,826)		   Bacteria
(1,279)		   Viruses
(0)		   Phages
(0)		   Unclassified
(135)		   All
(38,041)		  
  SAGE NlaIII
(2)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(14,175)		   Tiling Array
(1,015)		   cDNA Array
(2,097)		   Oligo Array
(16,349)		   Bead Array
(3,098)		   Protein Array
(0)		   Antibody
(28)		   RT-PCR
(210)		   HT-Seq
(1,034)		   Other
(29)		   All
(38,041)		  
  brain
(1,660)		   blood
(7,893)		   connective
(3,120)		   reproductive
(796)		   muscular
(652)		   digestive
(783)		   liver
(2,317)		   lung
(1,893)		   urinary
(507)		   endo/exo-crine
(2,889)		   embryo
(516)		   adult aerial structure
(734)		   young aerial structure
(168)		   root
(163)		   meristem/growing tissue
(19)		   flower/sexual organ
(103)		   seed/fruit/grain
(54)		   pooled
(1,476)		   unclassified
(12,298)		   all
(38,041)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM587717 LN229_KO_neg_r1 33,096 ZheJiang University 2010-08-26 [Oligo Array] ABI Human Genome Survey Microarray Version 1 (GPL1426) RNA Homo sapiens
Homo sapiens		 unclassified source_name:mock knockdown title:LN229_KO_neg_r1 description:mock knockdown LN229 cells
2 GSM587718 LN229_KO_pos_r1 33,096 ZheJiang University 2010-08-26 [Oligo Array] ABI Human Genome Survey Microarray Version 1 (GPL1426) RNA Homo sapiens
Homo sapiens		 unclassified source_name:Sox2 knockdown title:LN229_KO_pos_r1 description:Sox2 knockdown LN229 cells
3 GSM587719 LN229_KO_neg_r2 33,096 ZheJiang University 2010-08-26 [Oligo Array] ABI Human Genome Survey Microarray Version 1 (GPL1426) RNA Homo sapiens
Homo sapiens		 unclassified source_name:mock knockdown title:LN229_KO_neg_r2 description:mock knockdown LN229 cells
4 GSM587720 LN229_KO_pos_r2 33,096 ZheJiang University 2010-08-26 [Oligo Array] ABI Human Genome Survey Microarray Version 1 (GPL1426) RNA Homo sapiens
Homo sapiens		 unclassified source_name:Sox2 knockdown title:LN229_KO_pos_r2 description:Sox2 knockdown LN229 cells
5 GSM567479 2 W/kg control group, biological rep1 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF sham exposed for 24 hours
6 GSM567480 2 W/kg control group, biological rep2 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF sham exposed for 24 hours
7 GSM567481 2 W/kg exposure group, biological rep1 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF exposed at SAR of 2.0 W/kg for 24 hours
8 GSM567482 2 W/kg exposure group, biological rep2 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF exposed at SAR of 2.0 W/kg for 24 hours
9 GSM567483 3.5 W/kg control group, biological rep1 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF sham exposed for 24 hours
10 GSM567484 3.5 W/kg control group, biological rep2 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF sham exposed for 24 hours
11 GSM567485 3.5 W/kg exposure group, biological rep1 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF exposed at SAR of 3.5 W/kg for 24 hours
12 GSM567486 3.5 W/kg exposure group, biological rep2 22,283 Zhejiang University 2010-07-19 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens		 breast MCF-7 cells, RF EMF exposed at SAR of 3.5 W/kg for 24 hours
13 GSM586971 Sox2 ChIP-Seq 0 ZheJiang University 2010-08-25 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Sox2 ChIP title:Sox2 ChIP-Seq description:Chromatin IP against Sox2
14 GSM586972 Normal IgG ChIP-Seq 0 ZheJiang University 2010-08-25 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Normal IgG ChIP title:Normal IgG ChIP-Seq description:Chromatin IP against IgG
15 GSM600989 BCV 0 Zhejiang University 2010-09-27 [HT Sequencing] Illumina Genome Analyzer II (Bemisia tabaci) (GPL10981) SRA Bemisia tabaci
Bemisia tabaci		 unclassified source_name:Whitefly female adult title:BCV description:obtain virus on infected tabocco plants
16 GSM600990 BC 0 Zhejiang University 2010-09-27 [HT Sequencing] Illumina Genome Analyzer II (Bemisia tabaci) (GPL10981) SRA Bemisia tabaci
Bemisia tabaci		 unclassified source_name:Whitefly female adult title:BC description:transfer to healthy tabocco plants as an control
17 GSM597066 100 µM phloretin-2-1 8,800 Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH) 2010-09-22 [Oligo Array] JCVI PFGRC Trypanosoma brucei 19K v3 array designed primarily based on strain TREU927 (GPL5905) RNA Trypanosoma brucei
Trypanosoma brucei		 unclassified source_name:BS WT BS WT treated with 100 µM phloretin for 24h title:100 µM phloretin-2-1
18 GSM597067 100 µM phloretin-2-2 8,800 Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH) 2010-09-22 [Oligo Array] JCVI PFGRC Trypanosoma brucei 19K v3 array designed primarily based on strain TREU927 (GPL5905) RNA Trypanosoma brucei
Trypanosoma brucei		 unclassified source_name:BS WT BS WT treated with 100 µM phloretin for 24h title:100 µM phloretin-2-2
19 GSM597068 100 µM phloretin-3 8,800 Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH) 2010-09-22 [Oligo Array] JCVI PFGRC Trypanosoma brucei 19K v3 array designed primarily based on strain TREU927 (GPL5905) RNA Trypanosoma brucei
Trypanosoma brucei		 unclassified source_name:BS WT BS WT treated with 100 µM phloretin for 24h title:100 µM phloretin-3
20 GSM597069 100 µM phloretin-1-1 8,800 Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH) 2010-09-22 [Oligo Array] JCVI PFGRC Trypanosoma brucei 19K v3 array designed primarily based on strain TREU927 (GPL5905) RNA Trypanosoma brucei
Trypanosoma brucei		 unclassified source_name:BS WT BS WT treated with 100 µM phloretin for 24h title:100 µM phloretin-1-1
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