Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(898,944)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(377,145)

Tiling Array
(21,846)

cDNA Array
(103,476)

Oligo Array
(239,584)

All
(898,944)

reproductive
(38,618)

lung
(30,850)

endo/exo-crine
(55,952)

embryo
(18,082)

adult aerial structure
(12,032)

young aerial structure
(8,350)

root
(4,764)

meristem/growing tissue
(2,248)

flower/sexual organ
(3,045)

seed/fruit/grain
(3,128)

pooled
(52,306)

unclassified
(261,596)

all
(898,944)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM416756	A549	796,698	Whitehead Institute	2009-06-12	[HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052)	SRA	Homo sapiens	lung	A549
2	GSM538598	BGA89	278,899	USDA-ARS USMARC	2010-04-27	[HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323)	SRA	Bos taurus	lung	lung (redo of lja27)
3	GSM484820	Lung_pooled 3 control pigs (C)	249,407	Sun Yat-sen University	2009-12-14	[HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126)	SRA	Sus scrofa	lung	pooled lung of three pigs (uninfected negative control)
4	GSM499029	Lung 168h pooled 3 infected pigs (N168)	147,432	Sun Yat-sen University	2010-01-20	[HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126)	SRA	Sus scrofa	lung	pooled lung of three pigs (168h pi infected with N-PRRSV)
5	GSM499028	Lung 96h pooled 3 infected pigs (N96)	141,930	Sun Yat-sen University	2010-01-20	[HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126)	SRA	Sus scrofa	lung	pooled lung of three pigs (96h pi infected with N-PRRSV)
6	GSM484822	Lung_168h_pooled 3 infected pigs (168)	133,936	Sun Yat-sen University	2009-12-14	[HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126)	SRA	Sus scrofa	lung	pooled lung of three pigs (168h pi infected with H-PRRSV)
7	GSM484821	Lung_96h_pooled 3 infected pigs (H96)	126,648	Sun Yat-sen University	2009-12-14	[HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126)	SRA	Sus scrofa	lung	pooled lung of three pigs (96h pi infected with H-PRRSV)
8	GSM980726	Gill Tissue Control	35,015	California State University, San Marcos	2012-08-04	[HT Sequencing] 454 GS FLX (Litopenaeus stylirostris) (GPL15903)	SRA	Litopenaeus stylirostris	lung	Gill Tissue Control
9	GSM495812	T. nigroviridis gills_Low calcium 2h	31,907	Centro de CiÃƒÂªncias do Mar (CCMAR), CIMAR-LaboratÃƒÂ³rio Associado	2010-01-12	[HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947)	SRA	Tetraodon nigroviridis	lung	Gills, exposed to low calcium water (containing 0.01 mM Ca2+), 2h
10	GSM495813	T. nigroviridis gills_control 12h	27,403	Centro de CiÃƒÂªncias do Mar (CCMAR), CIMAR-LaboratÃƒÂ³rio Associado	2010-01-12	[HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947)	SRA	Tetraodon nigroviridis	lung	Gills, exposed to control water containing 2.9 mM Ca2+, 12h
11	GSM495817	T. nigroviridis gills_Low calcium 12h	24,886	Centro de CiÃƒÂªncias do Mar (CCMAR), CIMAR-LaboratÃƒÂ³rio Associado	2010-01-12	[HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947)	SRA	Tetraodon nigroviridis	lung	Gills, exposed to low calcium water (containing 0.01 mM Ca2+), 12h
12	GSM495795	T. nigroviridis gills_control2h	24,536	Centro de CiÃƒÂªncias do Mar (CCMAR), CIMAR-LaboratÃƒÂ³rio Associado	2010-01-12	[HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947)	SRA	Tetraodon nigroviridis	lung	Gills, exposed to control water containing 2.9 mM Ca2+, 2h
13	GSM495815	T. nigroviridis gills_High calcium 12h	24,427	Centro de CiÃƒÂªncias do Mar (CCMAR), CIMAR-LaboratÃƒÂ³rio Associado	2010-01-12	[HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947)	SRA	Tetraodon nigroviridis	lung	Gills, exposed to high calcium water (containing 10 mM Ca2+), 12h
14	GSM539870	mouse lung tissue [09-002]	16,786	NIAMS	2010-05-03	[HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250)	SRA	Mus musculus	lung	Mouse Lung
15	GSM980727	Gill Tissue Infected	11,020	California State University, San Marcos	2012-08-04	[HT Sequencing] 454 GS FLX (Litopenaeus stylirostris) (GPL15903)	SRA	Litopenaeus stylirostris	lung	Gill Tissue Infected
16	GSM1003453	Broad_ChipSeq_A549_H3K4me1_EtOH_0.02pct	0	UCSC ENCODE DCC	2012-09-13	[HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154)	SRA	Homo sapiens	lung	A549
17	GSM1003454	Broad_ChipSeq_A549_H3K9me3_EtOH_0.02pct	0	UCSC ENCODE DCC	2012-09-13	[HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154)	SRA	Homo sapiens	lung	A549
18	GSM1003455	Broad_ChipSeq_A549_H3K27me3_EtOH_0.02pct	0	UCSC ENCODE DCC	2012-09-13	[HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154)	SRA	Homo sapiens	lung	A549
19	GSM1003456	Broad_ChipSeq_A549_H3K36me3_EtOH_0.02pct	0	UCSC ENCODE DCC	2012-09-13	[HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154)	SRA	Homo sapiens	lung	A549
20	GSM1003458	Broad_ChipSeq_A549_H4K20me1_EtOH_0.02pct	0	UCSC ENCODE DCC	2012-09-13	[HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154)	SRA	Homo sapiens	lung	A549

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