Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(63,220)		   blood
(169,267)		   connective
(49,492)		   reproductive
(38,618)		   muscular
(24,498)		   digestive
(31,399)		   liver
(51,405)		   lung
(30,850)		   urinary
(18,692)		   endo/exo-crine
(55,952)		   embryo
(18,082)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,764)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,128)		   pooled
(52,306)		   unclassified
(261,596)		   all
(898,944)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM251124 DNAmeth_MethylatedDNA_532_LS replicate1 375,218 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 (GPL6285) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
2 GSM251127 DNAmeth_Genomic_635_LS replicate1 375,218 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 (GPL6285) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
3 GSM251131 DNAmeth_MethylatedDNA_532_LS replicate2 375,218 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 (GPL6285) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
4 GSM251132 DNAmeth_Genomic_635_LS replicate2 375,218 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 (GPL6285) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
5 GSM251135 H3K4Me2_MethylatedDNA_532_LS replicate1 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
6 GSM251136 H3K4Me2_MethylatedDNA_532_LS replicate2 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
7 GSM251137 H3K4Me2_MethylatedDNA_532_LS replicate3 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
8 GSM251141 H3K4Me2_Genomic_635_LS replicate1 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
9 GSM251142 H3K4Me2_Genomic_635_LS replicate2 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
10 GSM251177 H3K4Me2_Genomic_635_LS replicate3 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
11 GSM251181 H3K4Me3_MethylatedDNA_532_LS replicate1 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
12 GSM251182 H3K4Me3_MethylatedDNA_532_LS replicate2 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
13 GSM251183 H3K4Me3_MethylatedDNA_532_LS replicate3 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
14 GSM251187 H3K4Me3_Genomic_635_LS replicate1 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
15 GSM251188 H3K4Me3_Genomic_635_LS replicate2 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
16 GSM251189 H3K4Me3_Genomic_635_LS replicate3 374,479 Yale University 2007-12-17 [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) genomic Oryza sativa
Oryza sativa		 meristem/growing tissue light shoot
17 GSM151353 Shoot D1 60,727 Yale University 2006-12-14 [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Shoot D1 Shoot without treatment as control sample
18 GSM151354 Shoot D2 60,727 Yale University 2006-12-14 [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Shoot D2 Shoot without treatment as control sample
19 GSM151355 Shoot D3 60,727 Yale University 2006-12-14 [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Shoot D3 Shoot without treatment as control sample
20 GSM151356 Shoot D4 60,727 Yale University 2006-12-14 [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Shoot D4 Shoot without treatment as control sample
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