Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(179)

Primates
(0)

Rodents
(0)

Mammals
(0)

Vertebrates
(0)

Invertebrates
(39)

Plants
(0)

Bacteria
(23)

Viruses
(0)

Phages
(0)

Unclassified
(0)

All
(241)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Tiling Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(2)

Other
(0)

All
(241)

brain
(3)

blood
(52)

connective
(12)

reproductive
(0)

muscular
(0)

urinary
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(58)

all
(241)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1070815	Nt2/D1 rep1	47,229	M.M. Shemyakin and Yu.A. Ovchinnikov Institute of bioorganic chemistry of the Russian Academy of Sciences	2013-01-25	[Bead Array] Illumina HumanHT-12 V4.0 expression beadchip (GPL10558)	RNA	Homo sapiens	unclassified	source_name:cell line title:Nt2/D1 rep1 description:SAMPLE 1
2	GSM1070816	Tera-1 rep1	47,229	M.M. Shemyakin and Yu.A. Ovchinnikov Institute of bioorganic chemistry of the Russian Academy of Sciences	2013-01-25	[Bead Array] Illumina HumanHT-12 V4.0 expression beadchip (GPL10558)	RNA	Homo sapiens	unclassified	source_name:cell line title:Tera-1 rep1 description:SAMPLE 2
3	GSM1070819	NGP127 rep1	47,229	M.M. Shemyakin and Yu.A. Ovchinnikov Institute of bioorganic chemistry of the Russian Academy of Sciences	2013-01-25	[Bead Array] Illumina HumanHT-12 V4.0 expression beadchip (GPL10558)	RNA	Homo sapiens	unclassified	source_name:cell line title:NGP127 rep1 description:SAMPLE 6
4	GSM861617	chromosomal forum domains termini 1	0	Engelhardt Institute of Molecular Biology	2012-01-12	[HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186)	SRA	Homo sapiens	unclassified	source_name:HEK293T cells title:chromosomal forum domains termini 1 description:contains data from chromosomes Amplicon
5	GSM861618	chromosomal forum domains termini 2	0	Engelhardt Institute of Molecular Biology	2012-01-12	[HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186)	SRA	Homo sapiens	unclassified	source_name:HEK293T cells title:chromosomal forum domains termini 2 description:contains data from chromosomes Amplicon
6	GSM623401	HP 26695_wild type_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
7	GSM623402	HP 26695_wild type_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
8	GSM623403	HP 26695_wild type_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
9	GSM623404	HP 26695_wild type_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
10	GSM623405	HP 26695_Mutant 1_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
11	GSM623406	HP 26695_Mutant 1_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
12	GSM623407	HP 26695_Mutant 1_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone1 title:HP 26695_Mutant 1_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
13	GSM623408	HP 26695_Mutant 1_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
14	GSM623409	HP 26695_Mutant 2_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
15	GSM623410	HP 26695_Mutant 2_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
16	GSM623411	HP 26695_Mutant 2_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
17	GSM623412	HP 26695_Mutant 2_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
18	GSM414754	1PP01(13587687)	16,416	NIBOCH	2009-06-09	[Oligo Array] DGRC-D. melanogaster-DGRC2-17328-v1 (GPL3880)	RNA	Drosophila melanogaster	unclassified	source_name:reference, mixture of rnas from all stages PP01 title:1PP01(13587687) description:no additional information
19	GSM414755	1P14(13587688)	16,416	NIBOCH	2009-06-09	[Oligo Array] DGRC-D. melanogaster-DGRC2-17328-v1 (GPL3880)	RNA	Drosophila melanogaster	unclassified	source_name:reference, mixture of rnas from all stages P14 title:1P14(13587688) description:no additional information
20	GSM414756	1males(13587692)	16,416	NIBOCH	2009-06-09	[Oligo Array] DGRC-D. melanogaster-DGRC2-17328-v1 (GPL3880)	RNA	Drosophila melanogaster	unclassified	source_name:reference, mixture of rnas from all stages Males title:1males(13587692) description:no additional information

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