Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(76,365)
  blood
(211,180)
  connective
(60,911)
  reproductive
(45,577)
  muscular
(29,295)
  digestive
(39,046)
  liver
(61,369)
  lung
(38,619)
  urinary
(26,574)
  endo/exo-crine
(67,274)
  embryo
(23,689)
  adult aerial structure
(15,762)
  young aerial structure
(9,385)
  root
(5,771)
  meristem/growing tissue
(2,624)
  flower/sexual organ
(3,659)
  seed/fruit/grain
(3,781)
  pooled
(57,690)
  unclassified
(322,740)
  all
(1,101,311)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM110613 ash2I1_wing_discs_Rep1 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash2I1_(EXTRACTION 1) title:ash2I1_wing_discs_Rep1 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
2 GSM110614 ash2I1_wing_discs_Rep2 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash2I1_(EXTRACTION 1) wing_discs_wt_(POOL) title:ash2I1_wing_discs_Rep2 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
3 GSM110615 ash2I1_wing_discs_Rep3 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash2I1_(EXTRACTION 2) wing_discs_wt_(POOL) title:ash2I1_wing_discs_Rep3 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
4 GSM110616 ash2I1_wing_discs_Rep4 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash2I1_(EXTRACTION 2) title:ash2I1_wing_discs_Rep4 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
5 GSM110617 ash2112411_wing_discs_Rep1 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash2112411_(EXTRACTION 1) wing_discs_wt_(POOL) title:ash2112411_wing_discs_Rep1 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
6 GSM110618 ash2112411_wing_discs_Rep2 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash2112411_(EXTRACTION 2) wing_discs_wt_(POOL) title:ash2112411_wing_discs_Rep2 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
7 GSM110619 ash2112411_wing_discs_Rep3 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash2112411_(EXTRACTION 1) title:ash2112411_wing_discs_Rep3 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
8 GSM110620 ash2112411_wing_discs_Rep4 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash2112411_(EXTRACTION 2) title:ash2112411_wing_discs_Rep4 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
9 GSM110621 ash1^22_wing_discs_Rep1 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash1^22_(EXTRACTION 1) title:ash1^22_wing_discs_Rep1 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
10 GSM110622 ash1^22_wing_discs_Rep2 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash1^22_(EXTRACTION 1) wing_discs_wt_(POOL) title:ash1^22_wing_discs_Rep2 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
11 GSM110623 ash1^22_wing_discs_Rep3 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_wt_(POOL) wing_discs_ash1^22_(EXTRACTION 2) title:ash1^22_wing_discs_Rep3 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
12 GSM110624 ash1^22_wing_discs_Rep4 16,416 Universitat de Barcelona 2006-05-25 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:wing_discs_ash1^22_(EXTRACTION 2) wing_discs_wt_(POOL) title:ash1^22_wing_discs_Rep4 description:Total RNA from w1118;+;+ wing imaginal discs was pooled and used as a common reference against ash2I1, ash2112411 and ash122/ash122F2A. Four microarrays were hybridized for each experiment in biological replicate pairs, such that the total RNA from the sample used as a starting material came from different extractions. Both arrays from each pair were hybridized with the same amplified RNA from sample and common reference (obtained using the Amino-Allyl Messageamp II aRNA Amplification Kit from Ambion, Inc) but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
13 GSM217239 trxE3/trxB11_larvae_(Replicate1) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;+ isogenic wt larvae (pool) w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 1) title:trxE3/trxB11_larvae_(Replicate1) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
14 GSM217240 trxE3/trxB11_larvae_(Replicate2) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 1) w1118;+;+ isogenic wt larvae (pool) title:trxE3/trxB11_larvae_(Replicate2) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
15 GSM217241 trxE3/trxB11_larvae_(Replicate3) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;+ isogenic wt larvae (pool) w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 2) title:trxE3/trxB11_larvae_(Replicate3) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
16 GSM217242 trxE3/trxB11_larvae_(Replicate4) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 2) w1118;+;+ isogenic wt larvae (pool) title:trxE3/trxB11_larvae_(Replicate4) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
17 GSM217243 ash2I1_larvae_(Replicate1) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;ash2I1 isogenized larvae (Biological Replicate 1) w1118;+;+ isogenic wt larvae (pool) title:ash2I1_larvae_(Replicate1) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;ash2I1 total RNA coming from two different extractions to take biological differences into account. Amplified RNA (aRNA) was obtained with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) from w1118;+;+ and w1118;+;ash2I1 prior to hybridization.
18 GSM217244 ash2I1_larvae_(Replicate2) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;ash2I1 isogenized larvae (Biological Replicate 1) w1118;+;+ isogenic wt larvae (pool) title:ash2I1_larvae_(Replicate2) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;ash2I1 total RNA coming from two different extractions to take biological differences into account. Amplified RNA (aRNA) was obtained with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) from w1118;+;+ and w1118;+;ash2I1 prior to hybridization.
19 GSM217245 ash2I1_larvae_(Replicate3) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;ash2I1 isogenized larvae (Biological Replicate 2) w1118;+;+ isogenic wt larvae (pool) title:ash2I1_larvae_(Replicate3) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;ash2I1 total RNA coming from two different extractions to take biological differences into account. Amplified RNA (aRNA) was obtained with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) from w1118;+;+ and w1118;+;ash2I1 prior to hybridization.
20 GSM217246 ash2I1_larvae_(Replicate4) 16,416 Universitat de Barcelona 2007-08-10 [Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797) RNA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:w1118;+;ash2I1 isogenized larvae (Biological Replicate 2) w1118;+;+ isogenic wt larvae (pool) title:ash2I1_larvae_(Replicate4) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;ash2I1 total RNA coming from two different extractions to take biological differences into account. Amplified RNA (aRNA) was obtained with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) from w1118;+;+ and w1118;+;ash2I1 prior to hybridization.
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