Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(17,010)

Phages
(0)

All
(32,812)

SAGE Sau3A
(0)

Protein Array
(0)

Antibody
(0)

All
(32,812)

endo/exo-crine
(1,127)

embryo
(1,039)

adult aerial structure
(1,278)

young aerial structure
(426)

root
(391)

meristem/growing tissue
(355)

flower/sexual organ
(345)

seed/fruit/grain
(169)

pooled
(809)

unclassified
(10,388)

all
(32,812)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM138684	Dehydration of baker's yeast at 0h-1	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 0h-1 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
2	GSM138685	Dehydration of baker's yeast at 0h-2	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 0h-2 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
3	GSM138686	Dehydration of baker's yeast at 1h-1	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 1h-1 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
4	GSM138687	Dehydration of baker's yeast at 1h-2	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 1h-2 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
5	GSM138688	Dehydration of baker's yeast at 2h-1	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 2h-1 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
6	GSM138689	Dehydration of baker's yeast at 2h-2	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 2h-2 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
7	GSM138690	Dehydration of baker's yeast at 4h-1	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 4h-1 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
8	GSM138691	Dehydration of baker's yeast at 4h-2	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 4h-2 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
9	GSM138692	Dehydration of baker's yeast at 8h-1	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 8h-1 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
10	GSM138693	Dehydration of baker's yeast at 8h-2	9,335	Japan International Research Center for Agricultural Science	2006-10-05	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Baker's yeast title:Dehydration of baker's yeast at 8h-2 description:Normalized ratio data included in supplementary file: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value = [Raw value]/[Control value]". The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value = [Raw value]/[Control value]". i.e. [Control value] = [Raw value]/[Normalization value]
11	GSM15273	Expression profile of gpa2 deletion mutant (1)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:gpa2 deletion mutant title:Expression profile of gpa2 deletion mutant (1) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions.
12	GSM15275	Expression profile of gpa2 deletion mutant (2)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:gpa2 deletion mutant (2nd experiment) title:Expression profile of gpa2 deletion mutant (2) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions.
13	GSM15277	Expression profile of gpr1 deletion mutant (1)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:gpr1 deletion mutant title:Expression profile of gpr1 deletion mutant (1) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions.
14	GSM15279	Expression profile of gpr1 deletion mutant (2)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:gpr1 deletion mutant title:Expression profile of gpr1 deletion mutant (2) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions.
15	GSM15281	Expression profile of wild type strain (1)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:W303-1a (wild type) title:Expression profile of wild type strain (1) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions. .
16	GSM15283	Expression profile of wild type strain (2)	9,335	The University of Tokyo	2004-01-16	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:W303-1a (wild type strain) title:Expression profile of wild type strain (2) description:Type of experiment: Gene expression profiling analysis of S.cerevisiae W303-1a. Experimental factor: genetic variation (WT, gpr1 and gpa2 mutant strains). Number of hybridizations: 6. Single-colour labeling was performed for each sample. Sample preparation: Total RNA was prepared using FastRNA Pro Red Kit (BIO 101 Systems) according to the manufacturers' instructions.
17	GSM153627	Expression in wild type strain at meiosis 0 hr	9,335	RIKEN	2006-12-29	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:0 hr after transfer into sporulation medium title:Expression in wild type strain at meiosis 0 hr description:Gene expression data from diploid cells in premeiosis.
18	GSM153628	Expression in wild type strain at meiosis 4 hr	9,335	RIKEN	2006-12-29	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:4 hrs after transfer into sporulation medium title:Expression in wild type strain at meiosis 4 hr description:Gene expression data from diploid cells in prophase.
19	GSM153629	Expression in mre11delta strain at meiosis 0 hr	9,335	RIKEN	2006-12-29	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:0 hr after transfer into sporulation medium title:Expression in mre11delta strain at meiosis 0 hr description:Gene expression data from diploid cells in premeiosis.
20	GSM153630	Expression in mre11delta strain at meiosis 4 hr	9,335	RIKEN	2006-12-29	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:4 hrs after transfer into sporulation medium title:Expression in mre11delta strain at meiosis 4 hr description:Gene expression data from diploid cells in prophase.

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