Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(63,220)		   blood
(169,267)		   connective
(49,492)		   reproductive
(38,618)		   muscular
(24,498)		   digestive
(31,399)		   liver
(51,405)		   lung
(30,850)		   urinary
(18,692)		   endo/exo-crine
(55,952)		   embryo
(18,082)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,764)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,128)		   pooled
(52,306)		   unclassified
(261,596)		   all
(898,944)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM822765 Global 5' RACE +/- [MR97] 17,578,027 EMBL Grenoble Outstation 2011-10-26 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 unclassified source_name:Global 5' RACE +/- title:Global 5' RACE +/- [MR97] description:Adult Global 5'-RACE read_length: 105
2 GSM822766 Global 5' RACE -/ADH [MR99] 17,578,027 EMBL Grenoble Outstation 2011-10-26 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus		 unclassified source_name:Global 5' RACE -/ADH title:Global 5' RACE -/ADH [MR99] description:Adult Global 5'-RACE read_length: 105
3 GSM301562 HEK Input DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep1 description:raw sequence 070710_4
4 GSM301564 HEK Input DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep2 description:raw sequence 070929_5
5 GSM301565 HEK Input DNA rep3 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep3 description:raw sequence 070929_6
6 GSM301566 HEK ChIP DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep1 description:raw sequence 070824_2
7 GSM301567 HEK ChIP DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep2 description:raw sequence 070929_4
8 GSM856058 Col-0 RNA-seq 11,634,971 University of California, Los Angeles 2012-01-04 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Col-0 RNA-seq title:Col-0 RNA-seq description:mRNA-seq on poly-A purified RNA
9 GSM727524 ZiliIPTes 7,748,487 Hubrecht Institute 2011-05-20 [HT Sequencing] Illumina Genome Analyzer II (Danio rerio) (GPL9319) SRA Danio rerio
Danio rerio		 unclassified source_name:RNA obtained from immunoprecipitation with Zili antibody title:ZiliIPTes description:Small RNA sequence data (RIP-Seq)
10 GSM343498 Yeast Exponential phase glucose GCC library without MspI site 7,431,142 Massey University 2008-11-18 [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) SRA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Exponential yeast cells title:Yeast Exponential phase glucose GCC library without MspI site description:none
11 GSM506207 Kc PSC 3 6,247,570 FMI 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc genomic DNA title:Kc PSC 3 description:Chromatin was prepared from Kc cells and ChIP using an antibody against Drosophila PSC was performed.
12 GSM506206 Kc PSC 2 6,056,463 FMI 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc genomic DNA title:Kc PSC 2 description:Chromatin was prepared from Kc cells and ChIP using an antibody against Drosophila PSC was performed.
13 GSM611103 Cucumber_gall_infected 5,581,589 Hunan Agricultural University 2010-10-20 [HT Sequencing] Illumina Genome Analyzer (Capsicum annuum; Meloidogyne incognita) (GPL11112) SRA Capsicum annuum,Meloidogyne incognita
Capsicum annuum,Meloidogyne incognita		 unclassified source_name:M. incognita from infected gall of cucumber root title:Cucumber_gall_infected description:GC library.
14 GSM509288 rdp1delta_siRNA 5,565,042 University of Edinburgh 2010-02-15 [HT Sequencing] Illumina Genome Analyzer II (Schizosaccharomyces pombe) (GPL9453) SRA Schizosaccharomyces pombe
Schizosaccharomyces pombe		 unclassified source_name:rdp1delta_siRNA title:rdp1delta_siRNA
15 GSM385821 Drosophila OSS cell small RNA libraries, rep3 5,373,262 Memorial Sloan Kettering Cancer Center 2009-03-24 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Drosophila OSS cells title:Drosophila OSS cell small RNA libraries, rep3 description:Small RNA data (technical replicate).
16 GSM639446 tribolium_adults 5,151,841 University of Manchester 2010-12-13 [HT Sequencing] AB SOLiD System (Tribolium castaneum) (GPL11311) SRA Tribolium castaneum
Tribolium castaneum		 unclassified source_name:Tribolium castaneum adult individuals title:tribolium_adults description:Total endogenous small RNAs from Tribolium castaneum adults.
17 GSM336086 young adult males 5,084,112 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:young adult_males title:young adult males description:RNA enriched for small RNA species (<200nt)
18 GSM634228 TM-1 fiber_10DPA_rep1 4,983,793 Huazhong Agricultural University 2010-12-02 [HT Sequencing] Illumina Genome Analyzer (Gossypium hirsutum) (GPL9362) SRA Gossypium hirsutum
Gossypium hirsutum		 unclassified source_name:cotton fiber cells title:TM-1 fiber_10DPA_rep1
19 GSM634227 3-79 fiber_10DPA_rep1 4,863,589 Huazhong Agricultural University 2010-12-02 [HT Sequencing] Illumina Genome Analyzer (Gossypium barbadense) (GPL11270) SRA Gossypium barbadense
Gossypium barbadense		 unclassified source_name:cotton fiber cells title:3-79 fiber_10DPA_rep1
20 GSM687318 N28_initial_library 4,595,971 UMass Medical School 2011-03-08 [HT Sequencing] Illumina Genome Analyzer IIx (synthetic construct) (GPL11631) SRA synthetic construct
synthetic construct		 unclassified source_name:B1H randomized library title:N28_initial_library
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