Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,010)		   Primates
(80)		   Rodents
(7,471)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(565)		   Plants
(5,482)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(32,812)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(14,449)		   Tiling Array
(1,000)		   cDNA Array
(2,698)		   Oligo Array
(13,734)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(30)		   HT-Seq
(253)		   Other
(15)		   All
(32,812)		  
  brain
(2,523)		   blood
(3,910)		   connective
(1,279)		   reproductive
(1,469)		   muscular
(371)		   digestive
(1,997)		   liver
(2,973)		   lung
(1,530)		   urinary
(433)		   endo/exo-crine
(1,127)		   embryo
(1,039)		   adult aerial structure
(1,278)		   young aerial structure
(426)		   root
(391)		   meristem/growing tissue
(355)		   flower/sexual organ
(345)		   seed/fruit/grain
(169)		   pooled
(809)		   unclassified
(10,388)		   all
(32,812)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM556409 wt_static_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 wild-type cultivated under non-aerobic conditions title:wt_static_culture_30_degrees description:This sample is of the wild-type strain of Zymomonas mobilis ZM6. The gene expressions under a static culture at 30ºC were analyzed. wt-stat 37471202 SOM047NR
2 GSM556410 wt_shaking_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 wild-type cultivated under aerobic conditions title:wt_shaking_culture_30_degrees description:This sample is of the wild-type strain of Zymomonas mobilis ZM6. The gene expressions under a shaking culture at 30ºC were analyzed. wt-shak 37471402 SOM047NS
3 GSM556411 RDM4_shaking_culture_30_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 RDM-4 strain cultivated under aerobic conditions title:RDM4_shaking_culture_30_degrees description:This sample is of the RDM-4 strain of Zymomonas mobilis ZM6. Several RDM strains were isolated from the antibiotics-resistant mutants. The RDM-4 strain showed the most deficient respiration ability, grew well at 39ºC and produced ethanol well both in non-aerobic and aerobic conditions even at 39ºC. The gene expressions under a shaking culture at 30ºC were analyzed. RDM4_shak 37471502 SOM047NV
4 GSM556412 RDM4_static_culture_38_degrees 3,996 Beppu university 2010-06-15 [Oligo Array] NimbleGen_Zymomonas mobilis ZM4_4x72K array (GPL10545) RNA Zymomonas mobilis subsp. mobilis ATCC 29191
Zymomonas mobilis subsp. mobilis ATCC 29191		 unclassified source_name:Zymomonas mobilis ZM6 RDM-4 strain cultivated under non-aerobic conditions at 38 degrees title:RDM4_static_culture_38_degrees description:This sample is of the RDM-4 strain of Zymomonas mobilis ZM6. Several RDM strains were isolated from the antibiotics-resistant mutants. The RDM-4 strain showed the most deficient respiration ability, grew well at 39ºC and produced ethanol well both in non-aerobic and aerobic conditions even at 39ºC. Because of the low yield of total RNA extracted at 39ºC, the condition of high-temperature was adopted at 38ºC. The gene expressions under a static culture at 38ºC were analyzed. RDM4_therm 38353502 SOM047NT
5 GSM570078 DMSO treat 1 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:DMSO vehicle title:DMSO treat 1 description:Experiment1
6 GSM570079 DMSO treat 2 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:DMSO vehicle title:DMSO treat 2 description:Experiment2
7 GSM570080 DMSO treat 3 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:DMSO vehicle title:DMSO treat 3 description:Experiment3
8 GSM570081 DMSO treat 4 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:DMSO vehicle title:DMSO treat 4 description:Experiment4
9 GSM570082 DMSO treat 5 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:DMSO vehicle title:DMSO treat 5 description:Experiment5
10 GSM570083 1nM T3 treat 1 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 1 description:Experiment1
11 GSM570084 1nM T3 treat 2 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 2 description:Experiment2
12 GSM570085 1nM T3 treat 3 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 3 description:Experiment3
13 GSM570086 1nM T3 treat 4 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 4 description:Experiment4
14 GSM570087 1nM T3 treat 5 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 5 description:Experiment5
15 GSM570088 1nM T3 treat 6 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 treat title:1nM T3 treat 6 description:Experiment6
16 GSM570089 1nM T3 and 4OHPCB159 treat 1 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 and 4OHPCB159 treat title:1nM T3 and 4OHPCB159 treat 1 description:Experiment1
17 GSM570090 1nM T3 and 4OHPCB159 treat 2 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 and 4OHPCB159 treat title:1nM T3 and 4OHPCB159 treat 2 description:Experiment2
18 GSM570091 1nM T3 and 4OHPCB159 treat 3 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 and 4OHPCB159 treat title:1nM T3 and 4OHPCB159 treat 3 description:Experiment3
19 GSM570092 1nM T3 and 4OHPCB106 treat 1 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 and 4OHPCB106 treat title:1nM T3 and 4OHPCB106 treat 1 description:Experiment1
20 GSM570093 1nM T3 and 4OHPCB106 treat 2 21,495 Shizuoka University 2010-07-26 [Oligo Array] Xenopus Gene Expression Microarray (AMADID: 015066) (GPL10726) RNA Xenopus laevis
Xenopus laevis		 unclassified source_name:T3 and 4OHPCB106 treat title:1nM T3 and 4OHPCB106 treat 2 description:Experiment2
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