Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(988)		   cDNA Array
(2,586)		   Oligo Array
(13,249)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(160)		   Other
(15)		   All
(31,365)		  
  brain
(2,396)		   blood
(3,718)		   connective
(1,227)		   reproductive
(1,401)		   muscular
(340)		   digestive
(1,971)		   liver
(2,840)		   lung
(1,478)		   urinary
(419)		   endo/exo-crine
(1,090)		   embryo
(971)		   adult aerial structure
(1,248)		   young aerial structure
(418)		   root
(391)		   meristem/growing tissue
(349)		   flower/sexual organ
(345)		   seed/fruit/grain
(169)		   pooled
(775)		   unclassified
(9,819)		   all
(31,365)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM459760 Zymolyase MagExtractor rep3 10,928 National Food Rsearch Institute 2009-10-07 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Zymolyase rep3 title:Zymolyase MagExtractor rep3 description:Gene expression data from yeast
2 GSM459759 Zymolyase MagExtractor rep2 10,928 National Food Rsearch Institute 2009-10-07 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Zymolyase rep2 title:Zymolyase MagExtractor rep2 description:Gene expression data from yeast
3 GSM459758 Zymolyase MagExtractor rep1 10,928 National Food Rsearch Institute 2009-10-07 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Zymolyase rep1 title:Zymolyase MagExtractor rep1 description:Gene expression data from yeast
4 GSM625868 ZAPS 54,675 Hokkaido University 2010-11-18 [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) RNA Homo sapiens
Homo sapiens		 unclassified source_name:HEK293T, ZAPS title:ZAPS
5 GSM843629 Young_Rosette_rep3 34,415 RIKEN 2011-12-06 [Oligo Array] Agilent-022830 RIKEN_AT_sORF0902 (GPL14937) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Young_Rosette title:Young_Rosette_rep3
6 GSM843628 Young_Rosette_rep2 34,415 RIKEN 2011-12-06 [Oligo Array] Agilent-022830 RIKEN_AT_sORF0902 (GPL14937) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Young_Rosette title:Young_Rosette_rep2
7 GSM843627 Young_Rosette_rep1 34,415 RIKEN 2011-12-06 [Oligo Array] Agilent-022830 RIKEN_AT_sORF0902 (GPL14937) RNA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Young_Rosette title:Young_Rosette_rep1
8 GSM691414 Yolksac endoderm_Day4_2 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day4 Yolksac endoderm title:Yolksac endoderm_Day4_2 description:Pooled samples collected at every 4 hours over 1 day
9 GSM691413 Yolksac endoderm_Day4_1 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day4 Yolksac endoderm title:Yolksac endoderm_Day4_1 description:Pooled samples collected at every 4 hours over 1 day
10 GSM691412 Yolksac endoderm_Day3_2 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day3 Yolksac endoderm title:Yolksac endoderm_Day3_2 description:Pooled samples collected at every 4 hours over 1 day
11 GSM691411 Yolksac endoderm_Day3_1 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day3 Yolksac endoderm title:Yolksac endoderm_Day3_1 description:Pooled samples collected at every 4 hours over 1 day
12 GSM691410 Yolksac endoderm_Day2_2 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day2 Yolksac endoderm title:Yolksac endoderm_Day2_2 description:Pooled samples collected at every 4 hours over 1 day
13 GSM691409 Yolksac endoderm_Day2_1 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day2 Yolksac endoderm title:Yolksac endoderm_Day2_1 description:Pooled samples collected at every 4 hours over 1 day
14 GSM691408 Yolksac endoderm_Day1_2 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day1 Yolksac title:Yolksac endoderm_Day1_2 description:Pooled samples collected at every 4 hours over 1 day
15 GSM691407 Yolksac endoderm_Day1_1 38,535 Center for Developmental Biology, RIKEN 2011-03-14 [GeneChip] [Chicken] Affymetrix Chicken Genome Array (GPL3213) RNA Gallus gallus
Gallus gallus		 unclassified source_name:Day1 Yolksac title:Yolksac endoderm_Day1_1 description:Pooled samples collected at every 4 hours over 1 day
16 GSM301575 YES2 cell line relative to normal diploid cell 243,504 DNA Chip Research Inc 2008-06-30 [Oligo Array] Agilent-014693 Human Genome CGH Microarray 244A (Feature number version) (GPL4091) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Normal human diploid genomic DNA YES2 title:YES2 cell line relative to normal diploid cell description:YES2 cell line relative to normal duploid cell
17 GSM301574 YES1 cell line relative to normal diploid cell 243,504 DNA Chip Research Inc 2008-06-30 [Oligo Array] Agilent-014693 Human Genome CGH Microarray 244A (Feature number version) (GPL4091) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Normal human diploid genomic DNA YES1 title:YES1 cell line relative to normal diploid cell description:YES1 cell line relative to normal duploid cell
18 GSM387991 Yeast_freeze_2day_rep3 10,928 National Food Research Institute 2009-03-31 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast, freeze, 2day title:Yeast_freeze_2day_rep3 description:Statistical analysis after data acquisition and normalization of expression data were performed using GeneSpring ver.7.3.1 (Agilent Technologies, Palo Alto, CA, USA) based on the gene expression data from two independent experiments. After data transformation to GeneSpring, per-chip normalization to the 50th percentile was performed, and per-gene normalization to the control samples (non freeze sample: 0h) was applied to the per-chip normalized data.
19 GSM373313 Yeast_freeze_2day_rep2 10,928 National Food Research Institute 2009-02-22 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast, freeze, 2day title:Yeast_freeze_2day_rep2 description:Statistical analysis after data acquisition and normalization of expression data were performed using GeneSpring ver.7.3.1 (Agilent Technologies, Palo Alto, CA, USA) based on the gene expression data from two independent experiments. After data transformation to GeneSpring, per-chip normalization to the 50th percentile was performed, and per-gene normalization to the control samples (non freeze sample: 0h) was applied to the per-chip normalized data.
20 GSM373312 Yeast_freeze_2day_rep1 10,928 National Food Research Institute 2009-02-22 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast, freeze, 2day title:Yeast_freeze_2day_rep1 description:Statistical analysis after data acquisition and normalization of expression data were performed using GeneSpring ver.7.3.1 (Agilent Technologies, Palo Alto, CA, USA) based on the gene expression data from two independent experiments. After data transformation to GeneSpring, per-chip normalization to the 50th percentile was performed, and per-gene normalization to the control samples (non freeze sample: 0h) was applied to the per-chip normalized data.
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