Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(4)
  Rodents
(40)
  Mammals
(13)
  Vertebrates
(32)
  Invertebrates
(30)
  Plants
(76)
  Bacteria
(73)
  Viruses
(4)
  Phages
(0)
  Unclassified
(19)
  All
(394)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(20)
  Tiling Array
(27)
  cDNA Array
(58)
  Oligo Array
(216)
  Bead Array
(4)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(57)
  Other
(2)
  All
(394)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9995 NHRI Human 46K cDNA array 46,609 National Health Research Institutes 2010-02-01 Taiwan, NHRI microarray facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, NHRI Human 46K cDNA array,
2 GPL9981 UofT KB1 19.2K v2 19,200 University of toronto 2010-01-26 University Health Network (UHN) Microarray Facility, Toronto, Ontario, www.microarrays.ca dechlorinating enrichment culture KB-1
dechlorinating enrichment culture KB-1
cDNA Array spotted DNA/cDNA, UofT KB1 19.2K v2, KB1 mixed microbial consortium. Composition of community as estimated by 16S qPCR: Dehalococcoides:48.1-70.2% Chlorobi SJA-28:6-14.9% Acetobacterium:2.65-12% Sporomusa:1.2-11.45% Spirochaete SA-8 :2.8-8.3% Methanomicrobiales:3.5-5.8% OP5:2.5-5% Geobacter:3-4.4% Methanosarcina:0.1-1% Methanosaeta:0-0% Bacteroidales 1:0-0.8% Syntrophus:0-0.03% Syntrophobacter:0-0.2% Sulfurospirillum:0-0.002% Methanomethylvorans:0-0.04%
3 GPL9971 Murine 0.6K,cDNA array Version 8.0 931 Universidad do Porto 2010-01-25 EMBL Heidelberg,Genomics Core Facility Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Murine 0.6K,cDNA array Version 8.0,
4 GPL9966 NRC-BRI human 19K cDNA spotted array 15,067 National Research Council of Canada 2010-01-22 University Health Network (Toronto, ON, Canada) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, NRC-BRI human 19K cDNA spotted array, 19,008 genes/ESTs
5 GPL9965 NHGRI Homo sapiens 28K cDNA array 30,000 National Cancer Institute 2010-01-22 NHGRI Core facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, NHGRI Homo sapiens 28K cDNA array,
6 GPL9956 DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241 42,418 University of Delhi South Campus 2010-01-21 Agilent Oryza sativa
Oryza sativa
cDNA Array spotted DNA/cDNA, DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241,
7 GPL9952 Human 9K CGI Array 29,952 Chinese Academy of Sciences 2010-01-20 CapitalBio Corporation Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 9K CGI Array,
8 GPL9949 University of Groningen Bacillus cereus ATCC 14579 5k array (condensed) 5,167 university of Groningen 2010-01-20 University of Groningen Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
cDNA Array spotted DNA/cDNA, University of Groningen Bacillus cereus ATCC 14579 5k array (condensed), The Platform data table reflects a condensed representation of the array's replicate features.
9 GPL9943 SMD Print_1149 Mus musculus 40,704 Stanford University 2010-01-16 Stanford Functional Genomics Facility, Stanford School of Medicine Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, SMD Print_1149 Mus musculus,
10 GPL9906 UCSF Mouse BAC 3K array 2,896 University of California at San Francisco 2010-01-13 UCSF Cancer Research Institute Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, UCSF Mouse BAC 3K array, The clones are ordered by position in the genome (UCSC draft genome sequence, May 2004 freeze) beginning at chromosome 1 and ending with chromosome X.
11 GPL9901 SMD Print_745 Mycobacterium tuberculosis 4,608 Centro de Investigación y Asistencia en Tecnología y diseño del Estado de Jalisco, A.C. 2010-01-11 Stanford Functional Genomics Facility, Stanford School of Medicine Mycobacterium tuberculosis
Mycobacterium tuberculosis
cDNA Array spotted DNA/cDNA, SMD Print_745 Mycobacterium tuberculosis,
12 GPL9900 SMD Print_1259 Mycobacterium tuberculosis 4,992 Centro de Investigación y Asistencia en Tecnología y diseño del Estado de Jalisco, A.C. 2010-01-11 Stanford Functional Genomics Facility, Stanford School of Medicine Mycobacterium tuberculosis
Mycobacterium tuberculosis
cDNA Array spotted DNA/cDNA, SMD Print_1259 Mycobacterium tuberculosis,
13 GPL9873 SMD Print_1524 Homo sapiens 44,544 Stanford 2010-01-10 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1524 Homo sapiens,
14 GPL9872 SMD Print_1447 Homo sapiens 44,544 Stanford 2010-01-10 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1447 Homo sapiens,
15 GPL9871 SMD Print_1066 Homo sapiens 41,472 EULAR & FOCIS Center of Excellence 2010-01-10 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1066 Homo sapiens,
16 GPL9870 SMD Print_1060 Homo sapiens 41,472 EULAR & FOCIS Center of Excellence 2010-01-10 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1060 Homo sapiens,
17 GPL9869 SMD Print_1015 Homo sapiens 41,472 EULAR & FOCIS Center of Excellence 2010-01-10 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1015 Homo sapiens,
18 GPL10277 US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray 4,128 US Army ERDC 2010-03-31 US Army ERDC Pimephales promelas
Pimephales promelas
cDNA Array spotted DNA/cDNA, US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray,
19 GPL10271 USDA-ARS-PSMRU-SalmonellaTEv4 5,760 USDA ARS 2010-03-30 Produce Safety and Microbiology, USDA-ARS, Albany, CA Salmonella enterica
Salmonella enterica
cDNA Array spotted DNA/cDNA, USDA-ARS-PSMRU-SalmonellaTEv4,
20 GPL10269 Mussel MytArray 1.1 4,560 University of Padova 2010-03-30 C.R.I.B.I.-Biotechnology Centre and Dept. Biology (University of Padova) Mytilus galloprovincialis
Mytilus galloprovincialis
cDNA Array spotted DNA/cDNA, Mussel MytArray 1.1,
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