Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(204)
  Primates
(1)
  Rodents
(191)
  Mammals
(6)
  Vertebrates
(19)
  Invertebrates
(50)
  Plants
(84)
  Bacteria
(74)
  Viruses
(1)
  Phages
(0)
  Unclassified
(2)
  All
(632)
 
  SAGE NlaIII
(8)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(5)
  GeneChip
(266)
  Tiling Array
(26)
  cDNA Array
(170)
  Oligo Array
(152)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(3)
  All
(632)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Global gene expression analysis in the shoot apical meristem of maize (GSE4722) [cDNA Array] SAM1.0 (GPL2557) Iowa State University 2006-04-25 Zea mays
Zea mays
345,600
(19,200 x 18)
1 17 by_platform
by_series
2 The single ECF sigma factor of Xylella fastidiosa is involved in the heat shock response (GSE4960) [cDNA Array] Xylella USP microarray v2 (Koide et al. 2004 J.Bact.) (GPL2708) Institute for Systems Biology 2006-05-31 Xylella fastidiosa
Xylella fastidiosa
82,944
(4,608 x 18)
18 by_platform
by_series
3 CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2 (GSE5087) [cDNA Array] XCC 4.3K cDNA array (GPL3842) CapitalBio Corporation 2006-06-16 Xanthomonas campestris pv. campestris
Xanthomonas campestris pv. campestris
357,504
(12,768 x 28)
28 by_platform
by_series
4 Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests (GSE4877) [cDNA Array] VCholerae_A (GPL2742) Stanford Microarray Database (SMD) 2006-05-19 Vibrio cholerae
Vibrio cholerae
138,240
(5,760 x 24)
24 by_platform
by_series
5 O1->O139 Serogroup conversion / KanR selected (15%) (GSE5120) [cDNA Array] VC-oligos (GPL3052) Stanford University 2006-06-21 Vibrio cholerae
Vibrio cholerae
101,376
(4,224 x 24)
24 by_platform
by_series
6 Growth in minimal media with lactate (GSE4875) [cDNA Array] VCholerae_A (GPL2742) Stanford Microarray Database (SMD) 2006-05-19 Vibrio cholerae
Vibrio cholerae
23,040
(5,760 x 4)
4 by_platform
by_series
7 Growth in minimal media with maltose (GSE4876) [cDNA Array] VCholerae_A (GPL2742) Stanford Microarray Database (SMD) 2006-05-19 Vibrio cholerae
Vibrio cholerae
23,040
(5,760 x 4)
4 by_platform
by_series
8 Trichophyton rubrum germination study (GSE5083) [cDNA Array] MVGE_TRI_RUB1 (GPL3816) State Key Lab of Virus Gene Engineering 2006-06-15 Trichophyton rubrum
Trichophyton rubrum
718,848
(11,232 x 64)
64 by_platform
by_series
9 Expression profiling of T. rubrum treated with amphotericin B and ketoconazole (GSE5014) [cDNA Array] MVGE_TRI_RUB1 (GPL3816) State Key Lab of Virus Gene Engineering 2006-06-07 Trichophyton rubrum
Trichophyton rubrum
67,392
(11,232 x 6)
6 by_platform
by_series
10 A molecular neuroethological approach for identifying and characterizing a melody of behaviorally regulated genes (GSE4629) [cDNA Array] NIH-DUKE ZEBRAFINCH 18K v1.0 (GPL3621) Duke University Medical Center 2006-04-07 Taeniopygia guttata
Taeniopygia guttata
258,048
(18,432 x 14)
14 by_platform
by_series
11 Time course response of Synechocystis PCC 6803 to dehydration/desiccation and UV irradiation (GSE4613) [cDNA Array] Takara CyanoChip v.2.0 (GPL3214) Virginia Tech 2006-04-05 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
29,500
(2,950 x 10)
10 by_platform
by_series
12 Time course response of Synechocystis PCC 6803 to UV irradiation (GSE4606) [cDNA Array] Takara CyanoChip v.2.0 (GPL3214) Virginia Tech 2006-04-04 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
17,700
(2,950 x 6)
6 by_platform
by_series
13 Time course response of Synechocystis PCC 6803 to dehydration/desiccation (GSE4604) [cDNA Array] Takara CyanoChip v.2.0 (GPL3214) Virginia Tech 2006-04-04 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
11,800
(2,950 x 4)
4 by_platform
by_series
14 Microarray gene expression profiling of 27k cDNAs in 23 healthy porcine tissues (GSE4918) [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) Aarhus University 2006-05-24 Sus scrofa
Sus scrofa domestica
2,552,448
(55,488 x 46)
4 2 4 16 6 2 2 2 6 2 by_platform
by_series
15 Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae (GSE5088) [cDNA Array] Streptococcus pneumoniae TIGR4/R6 v2 (GPL3881) University of Groningen 2006-06-16 Streptococcus pneumoniae
Streptococcus pneumoniae
15,660
(5,220 x 3)
3 by_platform
by_series
16 Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae (GSE5088) [cDNA Array] Streptococcus pneumoniae TIGR4/R6 v3 (GPL3882) University of Groningen 2006-06-16 Streptococcus pneumoniae
Streptococcus pneumoniae
13,506
(4,502 x 3)
3 by_platform
by_series
17 Genomic comparison of vancomycin susceptible and vancomycin intermediate Staphylococcus aureus pairs (GSE5047) [cDNA Array] TIGR Staphylococcus aureus version2 array (GPL3866) Austin Health 2006-06-11 Staphylococcus aureus
Staphylococcus aureus
15,965
(3,193 x 5)
5 by_platform
by_series
18 Identification of salt stress regulated genes in tomato seedlings by SSH and microarray analysis (GSE4961) [cDNA Array] tomato cDNA array (Ye lab) (GPL3832) Boyce Thompson Institute 2006-05-31 Solanum lycopersicum
Solanum lycopersicum
124,416
(10,368 x 12)
12 by_platform
by_series
19 Effect of ppGpp on Salmonella Typhimurium gene expression (GSE4631) [cDNA Array] Institute of Food Research Salmonella typhimurium LT2 6k array (GPL3586) Institute of Food Research 2006-04-07 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,Salmonella enterica subsp. enterica serovar Typhimurium
49,152
(6,144 x 8)
8 by_platform
by_series
20 Effect of ppGpp on Salmonella Typhimurium gene expression (GSE4631) [cDNA Array] Institute of Food Research Salmonella typhimurium LT2 5.8K array (GPL3612) Institute of Food Research 2006-04-07 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
129,024
(5,376 x 24)
24 by_platform
by_series
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