Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(460)		   Primates
(0)		   Rodents
(72)		   Mammals
(0)		   Vertebrates
(67)		   Invertebrates
(286)		   Plants
(241)		   Bacteria
(46)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(1,172)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(373)		   Tiling Array
(0)		   cDNA Array
(386)		   Oligo Array
(368)		   Bead Array
(36)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(9)		   Other
(0)		   All
(1,172)		  
  brain
(0)		   blood
(10)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(158)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(25)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(7)		   unclassified
(186)		   all
(386)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM703054 leaves_0h_Rep1 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_control_0h Regent_leaves_control_0h
2 GSM703055 leaves_0h_Rep2 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_control_0h Regent_leaves_control_0h
3 GSM703056 leaves_6hpi_Rep1 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_6hpi Regent_leaves_infection_6hpi
4 GSM703057 leaves_6hpi_Rep2 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_6hpi Regent_leaves_infection_6hpi
5 GSM703058 leaves_6hpi_Rep3 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_6hpi Regent_leaves_infection_6hpi
6 GSM703059 leaves_12hpi_Rep1 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
7 GSM703060 leaves_12hpi_Rep1fw 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
8 GSM703061 leaves_12hpi_Rep2 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
9 GSM703062 leaves_12hpi_Rep3 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
10 GSM703063 leaves_12hpi_Rep3fw 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
11 GSM703064 leaves_12hpi_Rep3fw2 3,456 ICAT/FCUL 2011-04-06 [cDNA Array] Plant Systems Biology Lab, Vitis vinifera 3.4K cDNA microarray (GPL13378) RNA Vitis vinifera
Vitis vinifera		 leaf Trincadeira_leaves_infection_12hpi Regent_leaves_infection_12hpi
12 GSM752953 'Ercolini' versus 'Rocha'_T0h_rep1 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 leaf Biological replicate 1 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested after sprayed with water.
13 GSM752954 'Ercolini' versus 'Rocha'_T0h_rep2 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 leaf Biological replicate 2 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested after sprayed with water.
14 GSM752955 'Ercolini' versus 'Rocha'_T0h_rep3 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 leaf Biological replicate 3 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested after sprayed with water.
15 GSM752956 'Ercolini' versus 'Rocha'_T6h_rep1 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 1 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy3/Cy5), the leaves of both cultivars were harvested 6 hours after sprayed with Stemphylium vesicarium fungus.
16 GSM752957 'Ercolini' versus 'Rocha'_T6h_rep2 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 2 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested 6 hours after sprayed with Stemphylium vesicarium fungus.
17 GSM752958 'Ercolini' versus 'Rocha'_T6h_rep3 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 3 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested 6 hours after sprayed with Stemphylium vesicarium fungus.
18 GSM752959 'Ercolini' versus 'Rocha'_T24h_rep1 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 1 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested 24 hours after sprayed with Stemphylium vesicarium fungus.
19 GSM752960 'Ercolini' versus 'Rocha'_T24h_rep2 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 2 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested 24 hours after sprayed with Stemphylium vesicarium fungus.
20 GSM752961 'Ercolini' versus 'Rocha'_T24h_rep3 3,456 FCUL/ICAT/BioFIG 2011-07-01 [cDNA Array] ICAT_UMBPB Pyrus communis 3.5K cDNA microarray (GPL13804) RNA Pyrus communis
Pyrus communis		 other adult aerial structure Biological replicate 3 of 3. Comparison of resistant/tolerant 'Ercolini' versus susceptible 'Rocha' (Cy5/Cy3), the leaves of both cultivars were harvested 24 hours after sprayed with Stemphylium vesicarium fungus.
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