Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(269)
  Primates
(0)
  Rodents
(8)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(70)
  Plants
(0)
  Bacteria
(24)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(371)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(108)
  Tiling Array
(0)
  cDNA Array
(26)
  Oligo Array
(56)
  Bead Array
(155)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(26)
  Other
(0)
  All
(371)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(3)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(23)
  all
(26)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM48666 underreplication 1 47,616 Institute of Cytology and Genetics 2005-04-21 [cDNA Array] Heidelberg FlyArray (GPL517) genomic Drosophila melanogaster
Drosophila melanogaster
salivary genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
2 GSM48667 underreplication 2 47,616 Institute of Cytology and Genetics 2005-04-21 [cDNA Array] Heidelberg FlyArray (GPL517) genomic Drosophila melanogaster
Drosophila melanogaster
salivary genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
3 GSM48668 underreplication 3 47,616 Institute of Cytology and Genetics 2005-04-21 [cDNA Array] Heidelberg FlyArray (GPL517) genomic Drosophila melanogaster
Drosophila melanogaster
salivary genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
4 GSM623401 HP 26695_wild type_rep1 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, wild type title:HP 26695_wild type_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
5 GSM623402 HP 26695_wild type_rep2 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, wild type title:HP 26695_wild type_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
6 GSM623403 HP 26695_wild type_rep3 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, wild type title:HP 26695_wild type_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
7 GSM623404 HP 26695_wild type_rep4 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, wild type title:HP 26695_wild type_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
8 GSM623405 HP 26695_Mutant 1_rep1 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
9 GSM623406 HP 26695_Mutant 1_rep2 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
10 GSM623407 HP 26695_Mutant 1_rep3 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone1 title:HP 26695_Mutant 1_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
11 GSM623408 HP 26695_Mutant 1_rep4 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
12 GSM623409 HP 26695_Mutant 2_rep1 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
13 GSM623410 HP 26695_Mutant 2_rep2 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
14 GSM623411 HP 26695_Mutant 2_rep3 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
15 GSM623412 HP 26695_Mutant 2_rep4 3,210 Research Institute for Phys-Chim Medicine 2010-11-15 [cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208) RNA Helicobacter pylori 26695
Helicobacter pylori 26695
unclassified source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
16 GSM122079 Laboratory strain of U.parvum Up_LabStr 1,226 Research Institute of Physico-Chemical Medicine 2006-07-21 [cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020) genomic Ureaplasma parvum
Ureaplasma parvum
unclassified source_name:laboratory strain title:Laboratory strain of U.parvum Up_LabStr description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
17 GSM122080 Clinical isolate #1 Up_iso1 1,226 Research Institute of Physico-Chemical Medicine 2006-07-21 [cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020) genomic Ureaplasma parvum
Ureaplasma parvum
unclassified source_name:clinical isolate title:Clinical isolate #1 Up_iso1 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
18 GSM122081 Clinical isolate #11 Up_iso11 1,226 Research Institute of Physico-Chemical Medicine 2006-07-21 [cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020) genomic Ureaplasma parvum
Ureaplasma parvum
unclassified source_name:clinical isolate title:Clinical isolate #11 Up_iso11 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
19 GSM122082 Clinical isolate #14 Up_iso14 1,226 Research Institute of Physico-Chemical Medicine 2006-07-21 [cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020) genomic Ureaplasma parvum
Ureaplasma parvum
unclassified source_name:clinical isolate title:Clinical isolate #14 Up_iso14 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
20 GSM122083 Clinical isolate #15 Up_iso15 1,226 Research Institute of Physico-Chemical Medicine 2006-07-21 [cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020) genomic Ureaplasma parvum
Ureaplasma parvum
unclassified source_name:clinical isolate title:Clinical isolate #15 Up_iso15 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
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