Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(179)

Primates
(0)

Rodents
(0)

Mammals
(0)

Vertebrates
(0)

Invertebrates
(39)

Plants
(0)

Bacteria
(23)

Viruses
(0)

Phages
(0)

Unclassified
(0)

All
(241)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(52)

Tiling Array
(0)

cDNA Array
(26)

Oligo Array
(36)

Bead Array
(125)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(2)

Other
(0)

All
(241)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(3)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(23)

all
(26)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM623412	HP 26695_Mutant 2_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
2	GSM623411	HP 26695_Mutant 2_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
3	GSM623410	HP 26695_Mutant 2_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
4	GSM623409	HP 26695_Mutant 2_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 2 title:HP 26695_Mutant 2_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
5	GSM623408	HP 26695_Mutant 1_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
6	GSM623407	HP 26695_Mutant 1_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone1 title:HP 26695_Mutant 1_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
7	GSM623406	HP 26695_Mutant 1_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
8	GSM623405	HP 26695_Mutant 1_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, Rif Resistant, clone 1 title:HP 26695_Mutant 1_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
9	GSM623404	HP 26695_wild type_rep4	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep4 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
10	GSM623403	HP 26695_wild type_rep3	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep3 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
11	GSM623402	HP 26695_wild type_rep2	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep2 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
12	GSM623401	HP 26695_wild type_rep1	3,210	Research Institute for Phys-Chim Medicine	2010-11-15	[cDNA Array] RIPCM H. Pylori 3.2K 1576 v1.0 (GPL11208)	RNA	Helicobacter pylori 26695	unclassified	source_name:HP 26695, wild type title:HP 26695_wild type_rep1 description:Single resistant colonies grown on selective plates were picked up, transferred onto fresh rif-containing plates which were then incubated for 3 days. Then cells were harvested into 1 ml of saline, collected by centrifugation, and pellet was used for DNA extraction. The mutations in the gene that are responsible for resistance were identified by DNA sequencing and comparison with the sequence of the wild-type strain 26695.
13	GSM48668	underreplication 3	47,616	Institute of Cytology and Genetics	2005-04-21	[cDNA Array] Heidelberg FlyArray (GPL517)	genomic	Drosophila melanogaster	salivary	genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
14	GSM48667	underreplication 2	47,616	Institute of Cytology and Genetics	2005-04-21	[cDNA Array] Heidelberg FlyArray (GPL517)	genomic	Drosophila melanogaster	salivary	genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
15	GSM48666	underreplication 1	47,616	Institute of Cytology and Genetics	2005-04-21	[cDNA Array] Heidelberg FlyArray (GPL517)	genomic	Drosophila melanogaster	salivary	genomic DNA from Su(UR)- drosophila larvae salivary glands genomic DNA from 4xSu(UR)+ drosophila larvae salivary glands
16	GSM122089	Clinical isolate #135 Up_iso135	1,226	Research Institute of Physico-Chemical Medicine	2006-07-21	[cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020)	genomic	Ureaplasma parvum	unclassified	source_name:clinical isolate title:Clinical isolate #135 Up_iso135 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
17	GSM122088	Clinical isolate #122 Up_iso122	1,226	Research Institute of Physico-Chemical Medicine	2006-07-21	[cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020)	genomic	Ureaplasma parvum	unclassified	source_name:clinical isolate title:Clinical isolate #122 Up_iso122 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
18	GSM122087	Clinical isolate #116 Up_iso116	1,226	Research Institute of Physico-Chemical Medicine	2006-07-21	[cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020)	genomic	Ureaplasma parvum	unclassified	source_name:clinical isolate title:Clinical isolate #116 Up_iso116 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
19	GSM122086	Clinical isolate #88 Up_iso88	1,226	Research Institute of Physico-Chemical Medicine	2006-07-21	[cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020)	genomic	Ureaplasma parvum	unclassified	source_name:clinical isolate title:Clinical isolate #88 Up_iso88 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).
20	GSM122085	Clinical isolate #23 Up_iso23	1,226	Research Institute of Physico-Chemical Medicine	2006-07-21	[cDNA Array] RIPCM Ureaplasma parvum 1.2K RIPCM_UParvum_582 (GPL4020)	genomic	Ureaplasma parvum	unclassified	source_name:clinical isolate title:Clinical isolate #23 Up_iso23 description:Hybridization signals were quantified with ImageQuant 5.1 software (Molecular Dynamics).

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