Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(13,710)		   Tiling Array
(988)		   cDNA Array
(2,586)		   Oligo Array
(13,249)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(24)		   HT-Seq
(160)		   Other
(15)		   All
(31,365)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(55)		   young aerial structure
(34)		   root
(22)		   meristem/growing tissue
(27)		   flower/sexual organ
(7)		   seed/fruit/grain
(8)		   pooled
(0)		   unclassified
(0)		   all
(0)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM26098 2124_1_C0001_T0002 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 anther Control (CH1) source: Rice plants (anthers at the early middle microspore stage) grown under greenhouse condition. Target (CH2) source: Rice plants (anthers at the early middle microspore stage) treated with low temperature (12 degrees C, 5days)
2 GSM26099 2124_2_C0001_T0003 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 anther Control (CH1) source: Rice plants (anther early middle microspore stage) were grown under greenhouse condition Target (CH2) source: Rice plants (anthers at the early middle microspore stage) treated with low temperature (12 degrees C, 5days)
3 GSM26101 2126_1_C0101_T0101 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 other flower/sexual organ Control (CH1) source: Spikelets with young microspores at the early microspore stage (11 days before heading) Target (CH2) source: Spikelets with young microspores treated with low temperature (12 degreesC, 4 days)
4 GSM26102 2126_2_C0101_T0101 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 other flower/sexual organ Control (CH1) source: Spikelets with young microspores at the early microspore stage (11 days before heading) Target (CH2) source: Spikelets with young microspores treated with low temperature (12 degreesC, 1 days)
5 GSM26136 2207_1_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 other flower/sexual organ Control (CH1) source: Young panicles harvested on 11days of the heading Target (CH2) source: Young panicles before 7days of the heading
6 GSM26137 2207_2_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 other flower/sexual organ Control (CH1) source: Panicles before 11days of the heading Target (CH2) source: Young panicles treated with low temperature (12 degreesC) for 6 days
7 GSM26164 2225_1_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 ovary Control (CH1): Floral primordia of rice (Oryza sativa L. cv Taichung65) were harvested for RNA extraction. Purified mRNA were labeled by Cy5, and hybridized to the Rice 8987 EST microarray according to the protocols of reference (Yazaki J et al DNA Res. 2003; 10 :249). We calculated the expression ratio that applied to PRIM filtering and median normarization after dividing the signal intensity of RNA from traget plant by the signal intensity of that from control plant according the protocol of above reference. Target (CH2): Floral primordia of mutant dl (dl mutant: pistils were homeotically transformed into stamens) of rice (Oryza sativa L. cv Taichung65) were harvested for RNA extraction. Purified mRNA were labeled by Cy5, and hybridized to the Rice 8987 EST microarray according to the protocols of reference (Yazaki J et al DNA Res. 2003; 10 :249). We calculated the expression ratio that applied to PRIM filtering and median normarization after dividing the signal intensity of RNA from traget plant by the signal intensity of that from control plant according the protocol of above reference. Keyword: Rice microarray project, Rice 8987 EST array, dl mutant, Pistil, Stamen
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