Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,010)		   Primates
(80)		   Rodents
(7,471)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(565)		   Plants
(5,482)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(32,812)		  
  SAGE NlaIII
(28)		   SAGE RsaI
(3)		   SAGE Sau3A
(0)		   MPSS
(79)		   GeneChip
(14,449)		   Tiling Array
(1,000)		   cDNA Array
(2,698)		   Oligo Array
(13,734)		   Bead Array
(523)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(30)		   HT-Seq
(253)		   Other
(15)		   All
(32,812)		  
  brain
(490)		   blood
(123)		   connective
(82)		   reproductive
(78)		   muscular
(58)		   digestive
(46)		   liver
(111)		   lung
(425)		   urinary
(27)		   endo/exo-crine
(21)		   embryo
(16)		   adult aerial structure
(55)		   young aerial structure
(34)		   root
(22)		   meristem/growing tissue
(27)		   flower/sexual organ
(7)		   seed/fruit/grain
(8)		   pooled
(90)		   unclassified
(978)		   all
(2,698)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM26027 1000_1_C0201_T0201 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 50 microM GA3 for 3 days
2 GSM26028 1000_1_C0301_T0301 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 10 microM GA3 for 3 days
3 GSM26029 1000_21_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 50 microM ABA for 30 min
4 GSM26030 1000_22_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 50 microM GA3 for 30 min
5 GSM26031 1000_2_C0201_T0201 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 50 microM ABA for 3 days
6 GSM26032 1000_2_C0301_T0301 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 10 microM ABA for 3 days
7 GSM26033 1000_3_C0301_T0301 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 0.05 microM Brassinosteroid for 3 days
8 GSM26034 1000_3_C0401_T0401 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 0.02 microM Brassinosteroid for 3 days
9 GSM26035 1000_4_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 100microM IAA for 3 days
10 GSM26036 1000_5_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 100microM trans-Zeatin for 3 days
11 GSM26037 1000_5_C0301_T0301 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 1 microM trans-Zeatin for 3 days
12 GSM26038 1000_6_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 100microM Jasmonic acid for 3 days
13 GSM26039 1000_6_C0101_T0101 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 50microM Jasmonic acid for 3 days
14 GSM26040 1000_7_C0201_T0201 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Non treated callus (grown on MS medium including 2.4D for 30 days) Target (CH2) source: Callus treated with 15 microL Cyclooctane for 3 days
15 GSM26070 2112_1_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Control (CH1) source: Plants (shoot) grown hydroponically, under natural light in a green house Target (CH2) source: Plant (shoot) treated with sulfur (SO4-) defecient condition for 48 hours
16 GSM26071 2112_1_C0101_T0101 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Control (CH1) source: Plants (shoot) grown hydroponically, under natural light in a green house with 1.7mM silicic acid (Si) for 28 days Target (CH2) source: Plant (shoot) treated under silicic acid (Si) defecient condition for 28 days
17 GSM26072 2112_2_C0201_T0201 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Control (CH1) source: Plants (shoot) were grown hydroponically, under natural light in a green house Target (CH2) source: Plant (shoot) treated with sulfur (SO4-) defecient condition for 72 hours
18 GSM26073 2112_2_C0401_T0401 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 meristem/growing tissue Control (CH1) source: Plants (shoot) were grown hydroponically, under natural light in a green house without silicic acid, SiO2 Target (CH2) source: Plant (shoot) treated with 1ppm silicic acid (Si) for 14 days
19 GSM26089 2122_1_C0001_T0001 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Callus incubated on MS medium for 10 days at 27 degrees C Target (CH2) source: Callus introduced with TEIL gene
20 GSM26090 2122_1_C0101_T0101 8,987 National Institute of Agrobiological Sciences 2004-06-25 [cDNA Array] Rice 8987 EST microarray (GPL1245) RNA Oryza sativa
Oryza sativa		 callus Control (CH1) source: Callus shaked with MES buffer (pH5.5) for 3 h (20-30 degrees C) Target (CH2) source: Callus treated with ethephone solution (200 microM)
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