Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(387,571)		   Tiling Array
(22,136)		   cDNA Array
(104,070)		   Oligo Array
(246,081)		   Bead Array
(111,089)		   Protein Array
(5)		   Antibody
(1,156)		   RT-PCR
(4,464)		   HT-Seq
(38,248)		   Other
(7,261)		   All
(924,376)		  
  brain
(5,158)		   blood
(12,332)		   connective
(4,246)		   reproductive
(4,227)		   muscular
(2,294)		   digestive
(4,177)		   liver
(4,479)		   lung
(3,064)		   urinary
(2,306)		   endo/exo-crine
(4,767)		   embryo
(1,803)		   adult aerial structure
(2,637)		   young aerial structure
(921)		   root
(1,502)		   meristem/growing tissue
(294)		   flower/sexual organ
(436)		   seed/fruit/grain
(643)		   pooled
(6,708)		   unclassified
(42,076)		   all
(104,070)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM60618 Grape (Vitis riparia) buds long day (paradormant) verses short day (endodormancy induced) on Arabidopsis 9.2K (B) 18,432 South Dakota State University 2005-06-09 [cDNA Array] Yale 9.2K arabidopsis array (GPL2526) RNA Vitis riparia
Vitis riparia		 meristem/growing tissue Long day axillary buds Short day axillary buds
2 GSM60691 Grape (Vitis riparia) buds long day (paradormant) verses short day (endodormancy induced) on Arabidopsis 9.2K (A) 18,432 South Dakota State University 2005-06-09 [cDNA Array] Yale 9.2K arabidopsis array (GPL2526) RNA Vitis riparia
Vitis riparia		 meristem/growing tissue Short day axillary buds Long day buds
3 GSM60435 Grape (Vitis riparia) buds long day (paradormant) verses short day (endodormancy induced) on Arabidopsis 12K(B) 11,964 South Dakota State University 2005-06-07 [cDNA Array] Yale 12K Arabidopsis array (GPL2525) RNA Vitis riparia
Vitis riparia		 meristem/growing tissue Long day axillary buds Short day buds
4 GSM60613 Grape (Vitis riparia) buds long day (paradormant) verses short day (endodormancy induced) on Arabidopsis 12K (A) 11,964 South Dakota State University 2005-06-09 [cDNA Array] Yale 12K Arabidopsis array (GPL2525) RNA Vitis riparia
Vitis riparia		 meristem/growing tissue Short day axillary buds Long day axillary buds
5 GSM754008 14227234 - no_E3 vs E3 34,647 INRA 2011-07-05 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue E3: clusters of meristemoid cells, microdissected from calli no_E3: non-meristemoid cells from the same calli
6 GSM754694 13969311 - no_E4 vs E4 34,647 INRA 2011-07-06 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue E4: clusters of meristemoid cells, microdissected from calli no_E4: non-meristemoid cells from the same calli
7 GSM754698 14120009 - E2 vs no_E2 34,647 INRA 2011-07-06 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue no_E2: non-meristemoid cells from the same calli E2: clusters of meristemoid cells, microdissected from calli
8 GSM898115 13968863 - SG3 97.1 repet1 vs SG3 97.4 repet1 34,647 INRA 2012-03-21 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
9 GSM898121 13968874 - SG1 175.1 repet2 vs SG1 175.4 repet2 34,647 INRA 2012-03-21 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
10 GSM898122 13968872 - SG1 175.4 repet2 vs SG1 175.1 repet2 34,647 INRA 2012-03-21 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
11 GSM899001 13968867 - H1 rep1 vs A2 rep1 34,647 INRA 2012-03-22 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
12 GSM899003 13968869 - H1 rep2 vs A2 rep2 34,647 INRA 2012-03-22 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
13 GSM899004 13968868 - A2 rep2 vs H1 rep2 34,647 INRA 2012-03-22 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
14 GSM749617 14227730 - wt teeth 1 vs wt hollow 1 34,646 INRA 2011-06-28 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue CUC2 is expressed in meristem. It permits to create organs boundaries. It is also expressed in leave margins. Is there a mecanism meristem like in leave margins?
15 GSM749628 14249146 - wt hollow 4 vs wt teeth 4 34,646 INRA 2011-06-28 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue CUC2 is expressed in meristem. It permits to create organs boundaries. It is also expressed in leave margins. Is there a mecanism meristem like in leave margins?
16 GSM754696 14120007 - E3 vs no_E3 34,646 INRA 2011-07-06 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue no_E3: non-meristemoid cells from the same calli E3: clusters of meristemoid cells, microdissected from calli
17 GSM898119 13968871 - SG1 175.1 repet1 vs SG1 175.4 repet1 34,646 INRA 2012-03-21 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
18 GSM898120 13968870 - SG1 175.4 repet1 vs SG1 175.1 repet1 34,646 INRA 2012-03-21 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level
19 GSM749621 14227641 - cuc2 margin 2 vs wt margin 2 34,645 INRA 2011-06-28 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue CUC2 is expressed in meristem. It permits to create organs boundaries. It is also expressed in leave margins. Is there a mecanism meristem like in leave margins?
20 GSM749624 14227644 - wt margin 3 vs cuc2 margin 3 34,645 INRA 2011-06-28 [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) RNA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue CUC2 is expressed in meristem. It permits to create organs boundaries. It is also expressed in leave margins. Is there a mecanism meristem like in leave margins?
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