Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(33,137)
  Primates
(196)
  Rodents
(10,648)
  Mammals
(1,806)
  Vertebrates
(771)
  Invertebrates
(1,113)
  Plants
(7,693)
  Bacteria
(2,917)
  Viruses
(10)
  Phages
(0)
  Unclassified
(511)
  All
(58,828)
 
  SAGE NlaIII
(19)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(68)
  GeneChip
(24,200)
  Tiling Array
(868)
  cDNA Array
(7,370)
  Oligo Array
(14,147)
  Bead Array
(9,468)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(372)
  HT-Seq
(1,870)
  Other
(446)
  All
(58,828)
 
  brain
(590)
  blood
(1,628)
  connective
(205)
  reproductive
(68)
  muscular
(167)
  digestive
(208)
  liver
(216)
  lung
(60)
  urinary
(438)
  endo/exo-crine
(238)
  embryo
(153)
  adult aerial structure
(169)
  young aerial structure
(0)
  root
(208)
  meristem/growing tissue
(72)
  flower/sexual organ
(0)
  seed/fruit/grain
(48)
  pooled
(223)
  unclassified
(2,679)
  all
(7,370)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM339428 Bacteria_XDM2_BCYE_Rep1 493 Max-Delbruck Center for Molecular Medicine 2008-11-04 [cDNA Array] UNESP Xylella fastidiosa array version 1 (GPL7554) RNA Xylella fastidiosa
Xylella fastidiosa
unclassified source_name:Total RNA from Xylella fastidiosa Grown Under XDM2 Medium, labeled with Cyanine-5. Total RNA from Xylella fastidiosa Grown Under BCYE Medium, labeled with Cyanine-3. title:Bacteria_XDM2_BCYE_Rep1 description:It is worth mentioning that the chips were spotted within the lab. For the complete procedure, please refer to the manuscript.
2 GSM339429 Bacteria_XDM2_BCYE_Rep2 493 Max-Delbruck Center for Molecular Medicine 2008-11-04 [cDNA Array] UNESP Xylella fastidiosa array version 1 (GPL7554) RNA Xylella fastidiosa
Xylella fastidiosa
unclassified source_name:Total RNA from Xylella fastidiosa Grown Under XDM2 Medium, labeled with Cyanine-5. Total RNA from Xylella fastidiosa Grown Under BCYE Medium, labeled with Cyanine-3. title:Bacteria_XDM2_BCYE_Rep2 description:It is worth mentioning that the chips were spotted within the lab. For the complete procedure, please refer to the manuscript.
3 GSM339430 Bacteria_XDM2_BCYE_Rep3 493 Max-Delbruck Center for Molecular Medicine 2008-11-04 [cDNA Array] UNESP Xylella fastidiosa array version 1 (GPL7554) RNA Xylella fastidiosa
Xylella fastidiosa
unclassified source_name:Total RNA from Xylella fastidiosa Grown Under XDM2 Medium, labeled with Cyanine-5. Total RNA from Xylella fastidiosa Grown Under BCYE Medium, labeled with Cyanine-3. title:Bacteria_XDM2_BCYE_Rep3 description:It is worth mentioning that the chips were spotted within the lab. For the complete procedure, please refer to the manuscript.
4 GSM1079231 6BG/TMZ vs Control 494 Miltenyi Biotec GmbH 2013-02-06 [cDNA Array] PIQOR(TM) Cell death human, sense (562) (GPL16592) RNA Homo sapiens
Homo sapiens
unclassified source_name:6BG and TMZ Control title:6BG/TMZ vs Control description:compare gene expression profile of 6BG/TMZ vs Control
5 GSM1079232 TMZ vs 6BG 494 Miltenyi Biotec GmbH 2013-02-06 [cDNA Array] PIQOR(TM) Cell death human, sense (562) (GPL16592) RNA Homo sapiens
Homo sapiens
unclassified source_name:TMZ 6BG title:TMZ vs 6BG description:compare gene expression profile of TMZ vs 6BG
6 GSM1079233 6BG/TMZ vs 6BG 494 Miltenyi Biotec GmbH 2013-02-06 [cDNA Array] PIQOR(TM) Cell death human, sense (562) (GPL16592) RNA Homo sapiens
Homo sapiens
unclassified source_name:6BG and TMZ 6BG title:6BG/TMZ vs 6BG description:compare gene expression profile of 6BG/TMZ vs 6BG
7 GSM1079234 6BG/TMZ vs TMZ 494 Miltenyi Biotec GmbH 2013-02-06 [cDNA Array] PIQOR(TM) Cell death human, sense (562) (GPL16592) RNA Homo sapiens
Homo sapiens
unclassified source_name:6BG and TMZ TMZ title:6BG/TMZ vs TMZ description:compare gene expression profile of 6BG/TMZ vs TMZ
8 GSM671371 6h p.i. MAH10091 [mRNA] 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:6h post infection (MAH10091) non-infected control title:6h p.i. MAH10091 [mRNA] description:1_#1#4_Ausw
9 GSM671372 6h p.i. MAH104 [mRNA] 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:6h post infection (MAH104) non-infected control title:6h p.i. MAH104 [mRNA] description:2_#1#5_Ausw
10 GSM671373 24h p.i. MAH10091 [mRNA] 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:24h post infection (MAH10091) non-infected control title:24h p.i. MAH10091 [mRNA] description:3_#6#9_Ausw
11 GSM671374 24h p.i. MAH104 [mRNA] (dye-swap) 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:24h post infection (MAH104) non-infected control title:24h p.i. MAH104 [mRNA] (dye-swap) description:4_#6#10_Ausw data from replicate microarrays: colums were combined before data analysis; dye swap experiments: data was converted and treated like data from replicate arrays
12 GSM671375 48h p.i. MAH10091 [mRNA] 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:48h post infection (MAH10091) non-infected control title:48h p.i. MAH10091 [mRNA] description:6_#11#14_Ausw data from replicate microarrays: colums were combined before data analysis; dye swap experiments: data was converted and treated like data from replicate arrays
13 GSM671376 48h p.i. MAH104 [mRNA] 555 Freie Universitaet Berlin 2011-02-08 [cDNA Array] Miltenyi PIQOR (TM) Human Immunology Microarray, antisense (GPL10128) RNA Homo sapiens
Homo sapiens
unclassified source_name:48h post infection (MAH104) non-infected control title:48h p.i. MAH104 [mRNA] description:8_#11#15_Ausw
14 GSM317238 Tropocollagen_day3 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene MSC cultured on engineered tropocollagen surfaces title:Tropocollagen_day3 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
15 GSM317239 Tropocollagen_day6 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 6 days MSC cultured on engineered tropocollagen surfaces for 6 days title:Tropocollagen_day6 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
16 GSM317240 Tropo_day14 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 14 days MSC cultured on engineered tropocollagen surfaces for 14 days title:Tropo_day14 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
17 GSM317241 Collagen_day3 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 3 days MSC cultured on engineered collagen surfaces for 3 days title:Collagen_day3 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
18 GSM317242 Collagen_day6 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 6 days MSC cultured on engineered collagen surfaces for 6 days title:Collagen_day6 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
19 GSM317243 MSC_Collagen_day14 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 14 days MSC cultured on engineered collagen surfaces for 6 days title:MSC_Collagen_day14 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
20 GSM317244 Collagen_Hep_day3 948 Leibniz Institute for Polymer Research 2008-09-01 [cDNA Array] PIQOR (TM) Stem Cell, human AS (688) (GPL4666) RNA Homo sapiens
Homo sapiens
unclassified source_name:MSC cultured on plasma-treated polystyrene for 3 days MSC cultured on engineered collagen-heparin surfaces for 3 days title:Collagen_Hep_day3 description:Mean signal and local background intensities were determined for each spot on the array using ImaGen software (Biodiscovery, El Segundo USA).
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