Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(204)		   Primates
(1)		   Rodents
(191)		   Mammals
(6)		   Vertebrates
(19)		   Invertebrates
(51)		   Plants
(84)		   Bacteria
(74)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(632)		  
  SAGE NlaIII
(8)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(5)		   GeneChip
(266)		   Tiling Array
(26)		   cDNA Array
(170)		   Oligo Array
(152)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(3)		   All
(632)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Mouse Atlas of Gene Expression Project (GSE4726) [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) Canada's Michael Smith Genome Sciences Centre 2006-04-26 Mus musculus
Mus musculus		 490,560,048
(2,477,576 x 198) 		70 9 5 14 11 12 3 7 15 22 17 13 by_platform
by_series
2 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (mCIP, MBD) (GSE5094) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2006-06-16 Arabidopsis thaliana
Arabidopsis thaliana		 148,433,280
(6,184,720 x 24) 		24 by_platform
by_series
3 Global variation of copy number in the human genome_EA (GSE5013) [GeneChip] Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP) (GPL3812) Affymetrix, Inc 2006-06-06 Homo sapiens
Homo sapiens		 81,806,958
(267,343 x 306) 		306 by_platform
by_series
4 Global variation of copy number in the human genome_EA (GSE5013) [GeneChip] Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP) (GPL3811) Affymetrix, Inc 2006-06-06 Homo sapiens
Homo sapiens		 81,795,330
(267,305 x 306) 		306 by_platform
by_series
5 Global variation of copy number in the human genome_COMM (GSE5173) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) Affymetrix, Inc 2006-06-27 Homo sapiens
Homo sapiens		 72,405,288
(262,338 x 276) 		276 by_platform
by_series
6 Global variation of copy number in the human genome_COMM (GSE5173) [GeneChip] [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array (GPL3720) Affymetrix, Inc 2006-06-27 Homo sapiens
Homo sapiens		 65,792,328
(238,378 x 276) 		276 by_platform
by_series
7 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) (GSE5074) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) The Salk Institute 2006-06-14 Arabidopsis thaliana
Arabidopsis thaliana		 55,662,480
(6,184,720 x 9) 		9 by_platform
by_series
8 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) (GSE5074) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) The Salk Institute 2006-06-14 Arabidopsis thaliana
Arabidopsis thaliana		 55,662,480
(6,184,720 x 9) 		9 by_platform
by_series
9 ENCODE Spike-in ChIP-chip Experiments (GSE5053) [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) Baylor College of Medicine 2006-06-12 Homo sapiens
Homo sapiens		 30,945,054
(736,787 x 42) 		42 by_platform
by_series
10 PPARalpha Agonists Induce a Fiber-Type Selective Transcriptional Response in Rat Skeletal Muscle (GSE5100) [Oligo Array] Rosetta/Merck Rat 50k v2.1 Array 1 microarray (GPL3631) Merck & Co. 2006-06-19 Rattus norvegicus
Rattus norvegicus		 11,448,052
(23,653 x 484) 		132 147 205 by_platform
by_series
11 Embryonic and adult neural crest stem cells (GSE4680) [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) Newcastle University 2006-04-17 Mus musculus
Mus musculus		 7,432,728
(2,477,576 x 3) 		2 1 by_platform
by_series
12 Gene expression of disseminated neuroblastoma (GSE4991) [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) University Children's Hospital 2006-06-06 Homo sapiens
Homo sapiens		 7,213,059
(801,451 x 9) 		9 by_platform
by_series
13 Systemic inflammatory response syndrome and septic shock (GSE4607) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) CIncinnati Children's Hospital Medical Center 2006-04-04 Homo sapiens
Homo sapiens		 6,725,025
(54,675 x 123) 		123 by_platform
by_series
14 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer (GSE4922) [GeneChip] [HG-U133B] Affymetrix Human Genome U133B Array (GPL97) Genome Institute of Singapore 2006-05-25 Homo sapiens
Homo sapiens		 6,544,405
(22,645 x 289) 		289 by_platform
by_series
15 Quantitative Genomics study of sex dimorphism in D. Melanogaster (GSE5181) [Oligo Array] Whole Genome, Alternative Splicing Drosophila Chip v3 (GPL3809) University of Florida 2006-06-28 Drosophila melanogaster
Drosophila melanogaster		 6,501,600
(22,575 x 288) 		288 by_platform
by_series
16 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer (GSE4922) [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) Genome Institute of Singapore 2006-05-25 Homo sapiens
Homo sapiens		 6,439,787
(22,283 x 289) 		289 by_platform
by_series
17 A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer. (GSE4779) [GeneChip] [U133_X3P] Affymetrix Human X3P Array (GPL1352) Swiss Institute of Bioinformatics 2006-05-05 Homo sapiens
Homo sapiens		 6,258,618
(61,359 x 102) 		102 by_platform
by_series
18 Comparison of normal breast epithelium and stroma from reduction and I.D.C. cases (GSE4823) [Oligo Array] Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version) (GPL1708) McGill University 2006-05-12 Homo sapiens
Homo sapiens		 5,846,280
(44,290 x 132) 		132 by_platform
by_series
19 Large-scale deployment of embryonic gene programming in human and murine colon cancer: a new target for intervention. (GSE5206) [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) Cincinnati Children's Hospital Medical Center 2006-06-30 Homo sapiens
Homo sapiens		 5,740,875
(54,675 x 105) 		105 by_platform
by_series
20 Suz12, EZH2, EED1, H3me3K27, H3me3K9 and RNA Pol II target promoters in mouse F9 and mES cells (GSE4908) [Oligo Array] Nimblegen Mouse 1.5 kb promoter array [2006-11-16_MM5_min_promoter] (GPL3793) UC Davis Genome Center 2006-05-23 Mus musculus
Mus musculus		 5,409,936
(386,424 x 14) 		14 by_platform
by_series
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