Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(933)
  Primates
(11)
  Rodents
(598)
  Mammals
(42)
  Vertebrates
(71)
  Invertebrates
(160)
  Plants
(302)
  Bacteria
(108)
  Viruses
(0)
  Phages
(0)
  Unclassified
(12)
  All
(2,240)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(740)
  Tiling Array
(96)
  cDNA Array
(86)
  Oligo Array
(675)
  Bead Array
(220)
  Protein Array
(0)
  Antibody
(1)
  RT-PCR
(16)
  HT-Seq
(399)
  Other
(4)
  All
(2,240)
 
1   |   2   |   3   |   4   |   5      »      [20]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 MicroRNA sequence and expression analysis in breast tumors by deep sequencing (GSE28884) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Rockefeller University 2011-04-27 Homo sapiens
Homo sapiens
245
(0 x 245)
245 by_platform
by_series
2 MicroRNA sequence and expression analysis in breast tumors by deep sequencing [miRNA sequence data] (GSE29173) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Rockefeller University 2011-05-10 Homo sapiens
Homo sapiens
245
(0 x 245)
245 by_platform
by_series
3 An atlas of DNA methylomes in pig adipose and muscle tissues (GSE30344) [HT Sequencing] Illumina HiSeq 2000 (Sus scrofa) (GPL11429) Sichuan Agricultural University 2011-06-30 Sus scrofa
Sus scrofa domestica
180
(0 x 180)
108 36 36 by_platform
by_series
4 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington (GSE29692) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) ENCODE DCC 2011-06-02 Homo sapiens
Homo sapiens
151
(0 x 151)
6 13 2 4 2 6 6 2 110 by_platform
by_series
5 Histone Modifications by ChIP-seq from ENCODE/Broad Institute (GSE29611) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) ENCODE DCC 2011-05-27 Homo sapiens
Homo sapiens
141
(0 x 141)
38 4 2 14 83 by_platform
by_series
6 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington (GSE30263) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) ENCODE DCC 2011-06-28 Homo sapiens
Homo sapiens
121
(0 x 121)
3 10 4 3 3 3 3 92 by_platform
by_series
7 Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers (GSE28866) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Stanford School of Medicine 2011-04-26 Homo sapiens
Homo sapiens
99
(0 x 99)
31 13 13 14 8 17 3 by_platform
by_series
8 Characterization of the single-cell (ES and MEF) transcriptional landscape by highly multiplex RNA-Seq (GSE29087) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Karolinska Institutet 2011-05-05 Mus musculus
Mus musculus
96
(0 x 96)
44 48 4 by_platform
by_series
9 Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity (GSE30227) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) UNC-Chapel Hill 2011-06-27 Homo sapiens
Homo sapiens
89
(0 x 89)
38 8 6 4 33 by_platform
by_series
10 Histone Modifications by ChIP-seq from ENCODE/Broad Institute (GSE29611) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) ENCODE DCC 2011-05-27 Homo sapiens
Homo sapiens
84
(0 x 84)
6 8 8 62 by_platform
by_series
11 A draft map of cis-regulatory sequences in the mouse genome (GSE29184) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Ludwig Institute for Cancer Research 2011-05-10 Mus musculus
Mus musculus
81
(0 x 81)
11 14 8 14 8 7 8 1 1 8 1 by_platform
by_series
12 Histone Modifications by ChIP-seq from ENCODE/Broad Institute (GSE29611) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) ENCODE DCC 2011-05-27 Homo sapiens
Homo sapiens
71
(0 x 71)
25 2 23 4 1 16 by_platform
by_series
13 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq] (GSE29218) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Ludwig Institute for Cancer Research 2011-05-11 Mus musculus
Mus musculus
68
(0 x 68)
8 12 7 12 7 6 7 1 1 7 by_platform
by_series
14 A draft map of cis-regulatory sequences in the mouse genome (GSE29184) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Ludwig Institute for Cancer Research 2011-05-10 Mus musculus
Mus musculus
57
(0 x 57)
12 6 5 7 7 7 7 6 by_platform
by_series
15 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington (GSE29692) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) ENCODE DCC 2011-06-02 Homo sapiens
Homo sapiens
57
(0 x 57)
12 2 2 6 35 by_platform
by_series
16 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington (GSE30263) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) ENCODE DCC 2011-06-28 Homo sapiens
Homo sapiens
53
(0 x 53)
4 2 1 2 7 4 33 by_platform
by_series
17 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq] (GSE29218) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Ludwig Institute for Cancer Research 2011-05-11 Mus musculus
Mus musculus
49
(0 x 49)
10 5 4 6 6 6 6 6 by_platform
by_series
18 Technical and biological variance structure in mRNA-Seq data (GSE29022) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Mayo Clinic 2011-05-03 Homo sapiens
Homo sapiens
48
(0 x 48)
48 by_platform
by_series
19 Tissue-specific ChIP-seq of C. elegans Rb/E2F (GSE30246) [HT Sequencing] Illumina Genome Analyzer IIx (Caenorhabditis elegans) (GPL13776) Yale University School of Medicine 2011-06-27 Caenorhabditis elegans
Caenorhabditis elegans
48
(0 x 48)
48 by_platform
by_series
20 Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration (GSE29196) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) Children's Hospital Boston 2011-05-10 Homo sapiens
Homo sapiens
46
(0 x 46)
46 by_platform
by_series
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