Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(228)
  SAGE RsaI
(1)
  SAGE Sau3A
(16)
  MPSS
(67)
  GeneChip
(19,582)
  Tiling Array
(4,015)
  cDNA Array
(5,993)
  Oligo Array
(14,254)
  Bead Array
(4,043)
  Protein Array
(1)
  Antibody
(43)
  RT-PCR
(338)
  HT-Seq
(7,682)
  Other
(247)
  All
(56,529)
 
1   |   2   |   3   |   4   |   5      »      [385]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 High-throughput sequencing of small RNAs: Caenorhabditis elegans (GSE11738) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
179,289,920
(11,205,620 x 16)
1 15 by_platform
by_series
2 Developmental timecourse of C. elegans small RNAs with 5p monophosphates (GSE11734) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
100,850,580
(11,205,620 x 9)
1 8 by_platform
by_series
3 Mutant analysis of C. elegans small RNAs with 5p monophosphates (GSE11735) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
33,616,860
(11,205,620 x 3)
3 by_platform
by_series
4 Mutant analysis of C. elegans small RNAs, 5p-end-independent (GSE11736) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
22,411,240
(11,205,620 x 2)
2 by_platform
by_series
5 C. elegans PRG-1 co-IP small RNAs, 5p-end-independent (GSE11737) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
22,411,240
(11,205,620 x 2)
2 by_platform
by_series
6 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human Solexa Platform 14814K (GPL6314) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens
14,814,587
(14,814,587 x 1)
1 by_platform
by_series
7 High-throughput sequencing of small RNAs from Drosophila (GSE7448) [HT Sequencing] MIT/WI Bartel D. melanogaster 454 2007 (GPL5061) UCSF 2007-04-03 Drosophila melanogaster
Drosophila melanogaster
7,537,970
(753,797 x 10)
1 4 5 by_platform
by_series
8 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] Illumina small RNA sequencing (GPL7195) UCSF 2008-08-21 Mus musculus
Mus musculus
6,470,970
(2,156,990 x 3)
3 by_platform
by_series
9 Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome (GSE11007) [HT Sequencing] Axtell_Arabidopsis_Degradome_v1 (Solexa/Illumina sequenced) (GPL6684) Pennsylvania State University 2008-03-31 Arabidopsis thaliana
Arabidopsis thaliana
6,030,759
(2,010,253 x 3)
1 2 by_platform
by_series
10 Toxicity and transcriptomic analysis in Hyalella azteca suggests increased exposure and susceptibility of epibenthic organisms to Zinc Oxide Nanoparticles (GSE49136) [HT Sequencing] Hyalella azteca 135k array version 1 (GPL17458) UMass Boston 2013-07-23 Hyalella azteca
Hyalella azteca
3,981,671
(137,299 x 29)
29 by_platform
by_series
11 Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells (GSE11019) [HT Sequencing] Drosophila melanogaster deep-sequencing small RNAs (GPL6664) University of Massachusetts Medical School 2008-04-01 Drosophila melanogaster
Drosophila melanogaster
3,579,380
(255,670 x 14)
14 by_platform
by_series
12 Arabidopsis thaliana small RNAs sequences identified using high-throughput 454 sequencing technology (GSE6682) [HT Sequencing] Arabidopsis thaliana small RNAs sequences identified using high-throughput 454 sequencing technology (GPL4732) Donald Danforth Plant Science Center 2007-01-08 Arabidopsis thaliana
Arabidopsis thaliana
3,060,050
(218,575 x 14)
3 2 8 1 by_platform
by_series
13 A daily temporal program for rhythmic expression of protein-coding and non-coding genes in response to light and dark in Synechocystis sp. PCC 6803 (GSE47482) [HT Sequencing] Agilent-027432 Syn6803_expressions454_4-3probes (GPL15867) Humboldt-University Berlin 2013-05-29 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
2,803,640
(45,220 x 62)
62 by_platform
by_series
14 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human 454 Platform 2795K (GPL6300) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens
2,795,975
(2,795,975 x 1)
1 by_platform
by_series
15 Gene expression profiles of Hyalella azteca populations with different pyrethroid sensitivities (GSE48943) [HT Sequencing] Hyalella azteca 135k array version 1 (GPL17458) UMass Boston 2013-07-16 Hyalella azteca
Hyalella azteca
2,745,980
(137,299 x 20)
20 by_platform
by_series
16 In flies, the 5´ ends of both microRNAs and their miRNA* strands are more accurately defined than their 3´ termini (GSE9389) [HT Sequencing] UMMS Drosophila melanogaster 454 sequenced small RNAs (GPL6024) University of Massachusetts Medical School 2007-10-22 Drosophila melanogaster
Drosophila melanogaster
2,396,240
(59,906 x 40)
20 20 by_platform
by_series
17 ARGONAUTE-small RNA Interactions in Arabidopsis thaliana Identified by High-Throughput Sequencing (GSE12037) [HT Sequencing] Carrington-Arabidopsis-Illumina-miRNA-AGO-high-throughput sequencing (GPL7029) Donald Danforth Plant Science Center 2008-07-08 Arabidopsis thaliana
Arabidopsis thaliana
2,061,848
(515,462 x 4)
4 by_platform
by_series
18 Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment (GSE10119) [HT Sequencing] Plymouth Marine Laboratory 454 sequences, 439K (GPL6355) Plymouth Marine Laboratory 2008-01-09 marine metagenome
marine metagenome
1,755,632
(438,908 x 4)
4 by_platform
by_series
19 Characterization of unique small RNA populations from rice grain (GSE13152) [HT Sequencing] Monsanto-rice-454-smallRNAs-high throughput sequencing (GPL7470) Monsanto 2008-10-10 Oryza sativa
Oryza sativa
1,546,432
(386,608 x 4)
1 3 by_platform
by_series
20 Zebrafish Zili- and Ziwi-interacting small RNAs (GSE12547) [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) Hubrecht Institute 2008-08-26 Danio rerio
Danio rerio
1,497,144
(249,524 x 6)
4 2 by_platform
by_series
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