Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
1   |   2   |   3   |   4   |   5      »      [221]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 High-throughput sequencing of small RNAs: Caenorhabditis elegans (GSE11738) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 179,289,920
(11,205,620 x 16) 		1 15 by_platform
by_series
2 Developmental timecourse of C. elegans small RNAs with 5p monophosphates (GSE11734) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 100,850,580
(11,205,620 x 9) 		1 8 by_platform
by_series
3 Mutant analysis of C. elegans small RNAs with 5p monophosphates (GSE11735) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 33,616,860
(11,205,620 x 3) 		3 by_platform
by_series
4 Mutant analysis of C. elegans small RNAs, 5p-end-independent (GSE11736) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 22,411,240
(11,205,620 x 2) 		2 by_platform
by_series
5 C. elegans PRG-1 co-IP small RNAs, 5p-end-independent (GSE11737) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 22,411,240
(11,205,620 x 2) 		2 by_platform
by_series
6 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human Solexa Platform 14814K (GPL6314) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens		 14,814,587
(14,814,587 x 1) 		1 by_platform
by_series
7 High-throughput sequencing of small RNAs from Drosophila (GSE7448) [HT Sequencing] MIT/WI Bartel D. melanogaster 454 2007 (GPL5061) UCSF 2007-04-03 Drosophila melanogaster
Drosophila melanogaster		 7,537,970
(753,797 x 10) 		1 4 5 by_platform
by_series
8 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] Illumina small RNA sequencing (GPL7195) UCSF 2008-08-21 Mus musculus
Mus musculus		 6,470,970
(2,156,990 x 3) 		3 by_platform
by_series
9 Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome (GSE11007) [HT Sequencing] Axtell_Arabidopsis_Degradome_v1 (Solexa/Illumina sequenced) (GPL6684) Pennsylvania State University 2008-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 6,030,759
(2,010,253 x 3) 		1 2 by_platform
by_series
10 A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains (GSE11014) [HT Sequencing] CSIRO-PI Oryza Sativa small RNA sequences 2007 (Solexa sequenced) (GPL6670) CSIRO Plant Industry 2008-04-01 Oryza sativa
Oryza sativa		 5,367,312
(2,683,656 x 2) 		2 by_platform
by_series
11 Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells (GSE11019) [HT Sequencing] Drosophila melanogaster deep-sequencing small RNAs (GPL6664) University of Massachusetts Medical School 2008-04-01 Drosophila melanogaster
Drosophila melanogaster		 3,579,380
(255,670 x 14) 		14 by_platform
by_series
12 Arabidopsis thaliana small RNAs sequences identified using high-throughput 454 sequencing technology (GSE6682) [HT Sequencing] Arabidopsis thaliana small RNAs sequences identified using high-throughput 454 sequencing technology (GPL4732) Donald Danforth Plant Science Center 2007-01-08 Arabidopsis thaliana
Arabidopsis thaliana		 3,060,050
(218,575 x 14) 		3 2 8 1 by_platform
by_series
13 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human 454 Platform 2795K (GPL6300) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens		 2,795,975
(2,795,975 x 1) 		1 by_platform
by_series
14 In flies, the 5´ ends of both microRNAs and their miRNA* strands are more accurately defined than their 3´ termini (GSE9389) [HT Sequencing] UMMS Drosophila melanogaster 454 sequenced small RNAs (GPL6024) University of Massachusetts Medical School 2007-10-22 Drosophila melanogaster
Drosophila melanogaster		 2,396,240
(59,906 x 40) 		20 20 by_platform
by_series
15 ARGONAUTE-small RNA Interactions in Arabidopsis thaliana Identified by High-Throughput Sequencing (GSE12037) [HT Sequencing] Carrington-Arabidopsis-Illumina-miRNA-AGO-high-throughput sequencing (GPL7029) Donald Danforth Plant Science Center 2008-07-08 Arabidopsis thaliana
Arabidopsis thaliana		 2,061,848
(515,462 x 4) 		4 by_platform
by_series
16 Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment (GSE10119) [HT Sequencing] Plymouth Marine Laboratory 454 sequences, 439K (GPL6355) Plymouth Marine Laboratory 2008-01-09 marine metagenome
marine metagenome		 1,755,632
(438,908 x 4) 		4 by_platform
by_series
17 Characterization of unique small RNA populations from rice grain (GSE13152) [HT Sequencing] Monsanto-rice-454-smallRNAs-high throughput sequencing (GPL7470) Monsanto 2008-10-10 Oryza sativa
Oryza sativa		 1,546,432
(386,608 x 4) 		1 3 by_platform
by_series
18 Zebrafish Zili- and Ziwi-interacting small RNAs (GSE12547) [HT Sequencing] Hubrecht Institute Zebrafish Zili- and Ziwi-interacting small RNAs (454 GS FLX system) (GPL7207) Hubrecht Institute 2008-08-26 Danio rerio
Danio rerio		 1,497,144
(249,524 x 6) 		4 2 by_platform
by_series
19 High-throughput sequencing of small RNAs from Arabidopsis thaliana (GSE5228) [HT Sequencing] Arabidopsis thaliana high-throughput small RNA sequencing (GPL3968) Whitehead Institute for Biomedical Research, MIT Department of Biology 2006-07-04 Arabidopsis thaliana
Arabidopsis thaliana		 1,360,456
(340,114 x 4) 		1 1 1 1 by_platform
by_series
20 High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit (GSE12081) [HT Sequencing] High-throughput pyrosequencing of small RNAs in Tomato fruits and leaves (GPL7043) University of East Anglia 2008-07-11 Solanum lycopersicum
Solanum lycopersicum		 625,438
(312,719 x 2) 		1 1 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [221]
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