Gene Expression Omnibus (GEO) Overview latest dataset list Taxonomic Group:Plants, Platform class:all http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset Tue, 18 Jun 2013 22:25:48 -0500 Tue, 18 Jun 2013 22:25:48 -0500 rss74/v0.3+mod http://blogs.law.harvard.edu/tech/rss en-us Expression data from tobacco expressing 35S-AtHMA4 compared to the wild-type plants grown in the presence of Cd [GSE47037/GPL16330] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE47037/GPL16330 GSE47037]
Platform: [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum [GPL16330]
Species: [Plants] Nicotiana tabacumNicotiana tabacum
Institute: University of Warsaw
Submission date: 2013-05-16
Data size (probes x samples): 262,608 (43,768 x 6)
NCBI FTP site: by_series / by_platform]]> Thu, 16 May 2013 00:00:00 -0500 Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalasiossira pseudonana [GSE46982/GPL17168] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46982/GPL17168 GSE46982]
Platform: [Oligo Array] Agilent-020016 Thaps-BRTC [GPL17168]
Species: [Plants] Thalassiosira pseudonanaThalassiosira pseudonana
Institute: Rutgers University
Submission date: 2013-05-15
Data size (probes x samples): 90,648 (11,331 x 8)
NCBI FTP site: by_series / by_platform]]> Wed, 15 May 2013 00:00:00 -0500 Characterization of the microbial community structure in Candidatus Liberibacter asiaticus-infected Citrus plants treated with antibiotics in the field [GSE46727/GPL17136] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46727/GPL17136 GSE46727]
Platform: [GeneChip] [LBL-Phy3b520660] Affymetrix PhyloChip G3 array [GPL17136]
Species: [Plants] Citrus sinensisCitrus sinensis
Institute: University of Florida
Submission date: 2013-05-08
Data size (probes x samples): 98,208 (10,912 x 9)
NCBI FTP site: by_series / by_platform]]> Wed, 08 May 2013 00:00:00 -0500 Deciphering the Bacterial Microbiome of Citrus Plants in Response to ‘Candidatus Liberibacter asiaticus’-Infection and Antibiotic Treatments [GSE46728/GPL17136] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46728/GPL17136 GSE46728]
Platform: [GeneChip] [LBL-Phy3b520660] Affymetrix PhyloChip G3 array [GPL17136]
Species: [Plants] Citrus limoniaCitrus limonia
Institute: University of Florida
Submission date: 2013-05-08
Data size (probes x samples): 43,648 (10,912 x 4)
NCBI FTP site: by_series / by_platform]]> Wed, 08 May 2013 00:00:00 -0500 Responses of maize source leaf metabolism to low temperature, low nitrogen and low phosphorus stress [GSE46704/GPL14913] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46704/GPL14913 GSE46704]
Platform: [Oligo Array] Agilent-025271 Zea mays Mais_array_v1 [Probe Name version] [GPL14913]
Species: [Plants] Zea maysZea mays
Institute: FA University Erlangen
Submission date: 2013-05-07
Data size (probes x samples): 1,004,112 (41,838 x 24)
NCBI FTP site: by_series / by_platform]]> Tue, 07 May 2013 00:00:00 -0500 Expression data from OsEBS-transgenic rice B10201 and B10301 and control Guichao2 [GSE46616/GPL2025] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46616/GPL2025 GSE46616]
Platform: [GeneChip] [Rice] Affymetrix Rice Genome Array [GPL2025]
Species: [Plants] Oryza sativaOryza sativa
Institute: State Key Laboratory of Genetic Engineering, Institute of Genetics, Institute of Plant Science Research
Submission date: 2013-05-03
Data size (probes x samples): 172,143 (57,381 x 3)
NCBI FTP site: by_series / by_platform]]> Fri, 03 May 2013 00:00:00 -0500 Experiment comparing transcriptomes of red and purple tissue sections on Del/Ros1 Moneymaker fruit [GSE46341/GPL17060] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46341/GPL17060 GSE46341]
Platform: [Oligo Array] IBMCP_Tomato_12160_v1.0 (TOM2) [GPL17060]
Species: [Plants] Solanum lycopersicumSolanum lycopersicum
Institute: John Innes Centre
Submission date: 2013-04-24
Data size (probes x samples): 235,008 (13,056 x 18)
NCBI FTP site: by_series / by_platform]]> Wed, 24 Apr 2013 00:00:00 -0500 A Local Regulatory Network Around Three NAC Transcription Factors in Stress Responses and Senescence in Arabidopsis leaves [GSE46318/GPL16132] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46318/GPL16132 GSE46318]
Platform: [cDNA Array] CATMA Arabidopsis V4 TAIR V9 spotted cDNA array [GPL16132]
Species: [Plants] Arabidopsis thalianaArabidopsis thaliana
Institute: University of Warwick
Submission date: 2013-04-23
Data size (probes x samples): 4,290,132 (32,501 x 132)
NCBI FTP site: by_series / by_platform]]> Tue, 23 Apr 2013 00:00:00 -0500 24-hour herbivory exposure of VHb-expressing Populus tremula x Populus tremuloides [GSE46331/GPL17056] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46331/GPL17056 GSE46331]
Platform: [Oligo Array] FDMC Populus euphratica cDNA microarray slide [GPL17056]
Species: [Plants] Populus tremula x Populus tremuloidesPopulus tremula x Populus tremuloides
Institute: University of Oulu
Submission date: 2013-04-23
Data size (probes x samples): 457,056 (25,392 x 18)
NCBI FTP site: by_series / by_platform]]> Tue, 23 Apr 2013 00:00:00 -0500 Expression data from two year old shoot apex and mature xylem of Populus tomentosa [GSE46312/GPL4359] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46312/GPL4359 GSE46312]
Platform: [GeneChip] [Poplar] Affymetrix Poplar Genome Array [GPL4359]
Species: [Plants] Populus tomentosaPopulus tomentosa
Institute: CSIRO
Submission date: 2013-04-23
Data size (probes x samples): 245,652 (61,413 x 4)
NCBI FTP site: by_series / by_platform]]> Tue, 23 Apr 2013 00:00:00 -0500 Gene expression profile of response to auxin at 3 h after treatment in rice root tips: IR64 vs Dro1-NIL [GSE46255/GPL6864] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46255/GPL6864 GSE46255]
Platform: [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) [GPL6864]
Species: [Plants] Oryza sativaOryza sativa
Institute: National Institute of Agrobiological Sciences
Submission date: 2013-04-22
Data size (probes x samples): 271,320 (45,220 x 6)
NCBI FTP site: by_series / by_platform]]> Mon, 22 Apr 2013 00:00:00 -0500 Whole-genome expression profiling of ramie (Boehmeria nivea L. Gaud) responding to drought stress by Illumina tag-sequencing [GSE46253/GPL17045] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46253/GPL17045 GSE46253]
Platform: [HT Sequencing] Illumina HiSeq 2000 (Boehmeria nivea) [GPL17045]
Species: [Plants] Boehmeria niveaBoehmeria nivea
Institute: Chinese Academy of Agricultural Sciences
Submission date: 2013-04-22
Data size (probes x samples): 2 (0 x 2)
NCBI FTP site: by_series / by_platform]]> Mon, 22 Apr 2013 00:00:00 -0500 Populus tremula (European aspen) shows no evidence of sexual dimorphism in gene expression, phenotype, secondary defence or herbivory [GSE46219/GPL17041] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46219/GPL17041 GSE46219]
Platform: [Oligo Array] Agilent-021876 Populus 4x44K [gene-level] [GPL17041]
Species: [Plants] Populus tremulaPopulus tremula
Institute: Umeå University
Submission date: 2013-04-19
Data size (probes x samples): 875,900 (43,795 x 20)
NCBI FTP site: by_series / by_platform]]> Fri, 19 Apr 2013 00:00:00 -0500 Genome-wide study of the adaptation of Saccharomyces cerevisiae to the proliferative stages of wine fermentation [GSE46145/GPL17030] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46145/GPL17030 GSE46145]
Platform: [GeneChip] Affymetrix S. cerevisiae TAG4 101K array [GenFlex_Tag_16K_v2] [GPL17030]
Species: [Plants] Saccharomyces cerevisiaeSaccharomyces cerevisiae
Institute: Consejo Superior de Investigaciones Científicas
Submission date: 2013-04-17
Data size (probes x samples): 354,732 (12,669 x 28)
NCBI FTP site: by_series / by_platform]]> Wed, 17 Apr 2013 00:00:00 -0500 Global Analysis of Yeast mRNPs [GSE46142/GPL13821] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE46142/GPL13821 GSE46142]
Platform: [HT Sequencing] Illumina HiSeq 2000 (Saccharomyces cerevisiae) [GPL13821]
Species: [Plants] Saccharomyces cerevisiaeSaccharomyces cerevisiae
Institute: University of Colorado
Submission date: 2013-04-17
Data size (probes x samples): 9 (0 x 9)
NCBI FTP site: by_series / by_platform]]> Wed, 17 Apr 2013 00:00:00 -0500 transcriptomic analysis of phosphatin effect-Phosphatin effect on Arabidopsis [GSE45937/GPL15719] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE45937/GPL15719 GSE45937]
Platform: [Oligo Array] INRA-CNRS-UEVE Arabidopsis thaliana 73K CATMAv6-HD12 [GPL15719]
Species: [Plants] Arabidopsis thalianaArabidopsis thaliana
Institute: INRA
Submission date: 2013-04-10
Data size (probes x samples): 878,736 (73,228 x 12)
NCBI FTP site: by_series / by_platform]]> Wed, 10 Apr 2013 00:00:00 -0500 Characterization of SOC1’s central role in flowering by the identification of its upstream and downstream regulators [GSE45846/GPL11221] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE45846/GPL11221 GSE45846]
Platform: [HT Sequencing] Illumina Genome Analyzer IIx (Arabidopsis thaliana) [GPL11221]
Species: [Plants] Arabidopsis thalianaArabidopsis thaliana
Institute: Max Planck Institute for Developmental Biology
Submission date: 2013-04-08
Data size (probes x samples): 6 (0 x 6)
NCBI FTP site: by_series / by_platform]]> Mon, 08 Apr 2013 00:00:00 -0500 Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in different culture medium [GSE45855/GPL14982] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE45855/GPL14982 GSE45855]
Platform: [HT Sequencing] Illumina Genome Analyzer (Penicillium decumbens) [GPL14982]
Species: [Plants] Penicillium decumbensPenicillium decumbens
Institute: Shandong University
Submission date: 2013-04-08
Data size (probes x samples): 4 (0 x 4)
NCBI FTP site: by_series / by_platform]]> Mon, 08 Apr 2013 00:00:00 -0500 The ETHYLENE RESPONSE FACTOR 6 Acts as a Central Regulator of Leaf Growth under Water-Limiting Conditions in Arabidopsis thaliana [GSE45830/GPL14926] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE45830/GPL14926 GSE45830]
Platform: [Tiling Array] Affymetrix AGRONOMICS Tiling Array [CDF: agronomics1_TAIR9_gene] [GPL14926]
Species: [Plants] Arabidopsis thalianaArabidopsis thaliana
Institute: VIB-PSB
Submission date: 2013-04-05
Data size (probes x samples): 181,422 (30,237 x 6)
NCBI FTP site: by_series / by_platform]]> Fri, 05 Apr 2013 00:00:00 -0500 Defining the specificity of cotranslationally acting chaperones by systematic analysis of mRNAs associated with ribosome-nascent chain complexes. [GSE45798/GPL16965] http://lifesciencedb.jp/geo-e/?division=Plants&technology=all&order=date&action=ListDataset GSE45798/GPL16965 GSE45798]
Platform: [cDNA Array] SMD Print_1520 CAT07R4 Saccharomyces cerevisiae [GPL16965]
Species: [Plants] Saccharomyces cerevisiaeSaccharomyces cerevisiae
Institute: Stanford Microarray Database (SMD)
Submission date: 2013-04-04
Data size (probes x samples): 373,248 (20,736 x 18)
NCBI FTP site: by_series / by_platform]]> Thu, 04 Apr 2013 00:00:00 -0500