Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(3)		   blood
(111)		   connective
(15)		   reproductive
(43)		   muscular
(0)		   digestive
(196)		   liver
(0)		   lung
(36)		   urinary
(10)		   endo/exo-crine
(123)		   embryo
(18)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(23)		   unclassified
(6,777)		   all
(7,355)		  
[1]      «      1   |   2   |   3   |   4   |   5      »      [368]
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
41 GSM451664 CDMS3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, stationary title:CDMS3 description:specialized growth conditions for this sample: Cells were grown to an OD550 of 1.1.
42 GSM451665 CXS1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Complex media, stationary title:CXS1 description:specialized growth conditions for this sample: Cells were grown to an OD550 of 4.8.
43 GSM451666 CXS2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Complex media, stationary title:CXS2 description:specialized growth conditions for this sample: Cells were grown to an OD550 of 4.8.
44 GSM451667 CXS3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Complex media, stationary title:CXS3 description:specialized growth conditions for this sample: Cells were grown to an OD550 of 4.8.
45 GSM451668 CDMH1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, histidine as sole nitrogen source title:CDMH1 description:specialized growth conditions for this sample: 5 mM histidine replaced 10 mM NH4Cl as sole nitrogen source
46 GSM451669 CDMH2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, histidine as sole nitrogen source title:CDMH2 description:specialized growth conditions for this sample: 5 mM histidine replaced 10 mM NH4Cl as sole nitrogen source
47 GSM451670 CDMH3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, histidine as sole nitrogen source title:CDMH3 description:specialized growth conditions for this sample: 5 mM histidine replaced 10 mM NH4Cl as sole nitrogen source
48 GSM451671 CDM_N1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, nitrogen starvation title:CDM_N1 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
49 GSM451672 CDM_N2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, nitrogen starvation title:CDM_N2 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
50 GSM451673 CDM_N3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, nitrogen starvation title:CDM_N3 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
51 GSM451674 CDM_NR1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for nitrogen starvation title:CDM_NR1 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
52 GSM451675 CDM_NR2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for nitrogen starvation title:CDM_NR2 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
53 GSM451676 CDM_NR3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for nitrogen starvation title:CDM_NR3 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources and 10 mM ammonium chloride (CDM-NR). The other four cell pellets were individually resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources however, no nitrogen source was added (CDM-N). Growth was monitored by the turbidity at 550 nm. Once the four CDM-NR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM-N cultures were incubated an equivalent period of time as the CDM-NR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_N and CDM_NR) were used in array analysis.
54 GSM451677 CDM_C1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, carbon starvation title:CDM_C1 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
55 GSM451678 CDM_C2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, carbon starvation title:CDM_C2 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
56 GSM451679 CDM_C3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, carbon starvation title:CDM_C3 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
57 GSM451680 CDM_CR1 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for carbon starvation title:CDM_CR1 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
58 GSM451681 CDM_CR2 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for carbon starvation title:CDM_CR2 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
59 GSM451682 CDM_CR3 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, Completely defined media, succinate/glycerol, exponential, control recovery for carbon starvation title:CDM_CR3 description:specialized growth conditions for this sample: A starter culture of H. volcanii DS70 was used as the inoculum (1:1000 dilution) in eight 300 ml cultures of CDM in baffled flasks with foam stoppers (42‹C; 220 rpm). The cultures were grown to an OD550 of 0.1 and the cells were pelleted in sterile centrifuge tubes by centrifugation at 5,000 rpm for 10 minutes at 4‹C in the Beckham JLA10.500 rotor. The cell pellets were washed with basal salts and pelleted by centrifugation as stated above. The supernatant was removed and four of the cell pellets were resuspended in 300 ml of CDM supplemented with succinate and glycerol as carbon sources (CDM_CR). The other four cell pellets were individually resuspended in 300 ml of CDM; however, no carbon source was added (CDM_C). Growth was monitored by the turbidity at 550 nm. Once the four CDM_CR had doubled in turbidity, the culture was allowed to grow for an additional hour. The CDM_C cultures were incubated an equivalent period of time as the CDM_CR cultures. This corresponded to an incubation period of 3.5 hours. RNA was prepared from each and three biological replicates (CDM_C and CDM_CR) were used in array analysis.
60 GSM451683 CDM_sRNAP_E 255,984 The Ohio State Uinversity 2009-09-10 [GeneChip] Haloferax volcanii DS2 tiled array (GPL9170) RNA Haloferax volcanii
Haloferax volcanii		 unclassified source_name:DS70, small RNA, completely defined media, succinate/glycerol, exponential (pooled) title:CDM_sRNAP_E description:specialized growth conditions for this sample: none
[1]      «      1   |   2   |   3   |   4   |   5      »      [368]
DBCLS | Site Policies | Contact Us