Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8,349)
  Tiling Array
(1,464)
  cDNA Array
(10,807)
  Oligo Array
(21,920)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(51)
  HT-Seq
(2,336)
  Other
(164)
  All
(45,091)
 
  brain
(19)
  blood
(19)
  connective
(12)
  reproductive
(2)
  muscular
(0)
  digestive
(661)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(4)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(109)
  unclassified
(1,510)
  all
(2,336)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
61 GSM1005455 WT rep2 0 Umeå universitet 2012-09-18 [HT Sequencing] AB 5500xl Genetic Analyzer (Mycobacterium tuberculosis CDC1551) (GPL16065) SRA Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
unclassified source_name:WT title:WT rep2
62 GSM1005456 WT rep3 0 Umeå universitet 2012-09-18 [HT Sequencing] AB 5500xl Genetic Analyzer (Mycobacterium tuberculosis CDC1551) (GPL16065) SRA Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
unclassified source_name:WT title:WT rep3
63 GSM1005457 whiB6Tn rep1 0 Umeå universitet 2012-09-18 [HT Sequencing] AB 5500xl Genetic Analyzer (Mycobacterium tuberculosis CDC1551) (GPL16065) SRA Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
unclassified source_name:whiB6Tn title:whiB6Tn rep1
64 GSM1005458 whiB6Tn rep2 0 Umeå universitet 2012-09-18 [HT Sequencing] AB 5500xl Genetic Analyzer (Mycobacterium tuberculosis CDC1551) (GPL16065) SRA Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
unclassified source_name:whiB6Tn title:whiB6Tn rep2
65 GSM1005459 whiB6Tn rep3 0 Umeå universitet 2012-09-18 [HT Sequencing] AB 5500xl Genetic Analyzer (Mycobacterium tuberculosis CDC1551) (GPL16065) SRA Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
unclassified source_name:whiB6Tn title:whiB6Tn rep3
66 GSM1290063 Shew12222010.4 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1) (GPL18075) SRA Shewanella sp. W3-18-1
Shewanella sp. W3-18-1
unclassified source_name:Shew12222010.4 title:Shew12222010.4
67 GSM1290066 SS020812 R1.2 co-culture [Shewanella] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1) (GPL18075) SRA Shewanella sp. W3-18-1
Shewanella sp. W3-18-1
unclassified source_name:SS020812 R1.2 co-culture title:SS020812 R1.2 co-culture [Shewanella] description:These are co-culture experiments, the raw data are shared with SS020812 R1.2 co-culture [Shewanella] and SS020812 R1.2 co-culture [Synechococcus]
68 GSM1290067 SS020812 R1.0 co-culture [Shewanella] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1) (GPL18075) SRA Shewanella sp. W3-18-1
Shewanella sp. W3-18-1
unclassified source_name:SS020812 R1.0 co-culture title:SS020812 R1.0 co-culture [Shewanella] description:These are co-culture experiments, the raw data are shared with SS020812 R1.0 co-culture [Synechococcus] and SS020812 R1.0 co-culture [Synechococcus]
69 GSM1290059 SYN03282011R1.3 [AB3_1] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:SYN03282011R1.3 title:SYN03282011R1.3 [AB3_1]
70 GSM1290060 SYN03282011R1.0 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:SYN03282011R1.0 title:SYN03282011R1.0
71 GSM1290061 Syn02182011 R1.1 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:Syn02182011 R1.1 title:Syn02182011 R1.1
72 GSM1290062 Syn02182011 R1.3 [AB3_4] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:Syn02182011 R1.3 title:Syn02182011 R1.3 [AB3_4]
73 GSM1290064 SS020812 R1.2 co-culture [Synechococcus] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:SS020812 R1.2 co-culture title:SS020812 R1.2 co-culture [Synechococcus] description:These are co-culture experiments, the raw data are shared with SS020812 R1.2 co-culture [Shewanella] and SS020812 R1.2 co-culture [Synechococcus]
74 GSM1290065 SS020812 R1.0 co-culture [Synechococcus] 0 Pacific Northwest National Laboratory 2013-12-16 [HT Sequencing] AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) (GPL18074) SRA Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002
unclassified source_name:SS020812 R1.0 co-culture title:SS020812 R1.0 co-culture [Synechococcus] description:These are co-culture experiments, the raw data are shared with SS020812 R1.0 co-culture [Synechococcus] and SS020812 R1.0 co-culture [Synechococcus]
75 GSM1086989 uninduced 1 0 ETH Zurich 2013-02-22 [HT Sequencing] AB SOLiD 4 System (Bartonella henselae) (GPL16712) SRA Bartonella henselae
Bartonella henselae
unclassified source_name:bacterial colonies title:uninduced 1
76 GSM1086990 uninduced 2 0 ETH Zurich 2013-02-22 [HT Sequencing] AB SOLiD 4 System (Bartonella henselae) (GPL16712) SRA Bartonella henselae
Bartonella henselae
unclassified source_name:bacterial colonies title:uninduced 2
77 GSM1086991 induced 1 0 ETH Zurich 2013-02-22 [HT Sequencing] AB SOLiD 4 System (Bartonella henselae) (GPL16712) SRA Bartonella henselae
Bartonella henselae
unclassified source_name:bacterial colonies title:induced 1
78 GSM1086992 induced 2 0 ETH Zurich 2013-02-22 [HT Sequencing] AB SOLiD 4 System (Bartonella henselae) (GPL16712) SRA Bartonella henselae
Bartonella henselae
unclassified source_name:bacterial colonies title:induced 2
79 GSM1171540 CarD_HA_ChIP_seq_1 0 Memorial SLoan-Kettering Cancer Center 2013-06-20 [HT Sequencing] AB SOLiD 4 System (Mycobacterium smegmatis) (GPL17323) SRA Mycobacterium smegmatis
Mycobacterium smegmatis
unclassified source_name:CarD_HA_ChIP_seq title:CarD_HA_ChIP_seq_1
80 GSM1171541 CarD_HA_ChIP_seq_2 0 Memorial SLoan-Kettering Cancer Center 2013-06-20 [HT Sequencing] AB SOLiD 4 System (Mycobacterium smegmatis) (GPL17323) SRA Mycobacterium smegmatis
Mycobacterium smegmatis
unclassified source_name:CarD_HA_ChIP_seq title:CarD_HA_ChIP_seq_2
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