Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,463)		   Tiling Array
(684)		   cDNA Array
(10,536)		   Oligo Array
(19,945)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(877)		   Other
(57)		   All
(39,613)		  
  brain
(0)		   blood
(26)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(6)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(652)		   all
(684)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
581 GSM775837 PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.233_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.233 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.233_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 37C until OD600= 0.233 vs NRC-1
582 GSM775838 PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.471_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.471 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.471_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 37C until OD600= 0.471 vs NRC-1
583 GSM775839 PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.828_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.828 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-37C_od-0.828_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 37C until OD600= 0.828 vs NRC-1
584 GSM775840 PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.227_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.227 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.227_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 25C until OD600= 0.227 vs NRC-1
585 GSM775841 PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.419_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.419 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.419_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 25C until OD600= 0.419 vs NRC-1
586 GSM775842 PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.801_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbD-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.801 Halobacterium NRC-1 Reference sample title:PtfbD-tfbX/Δura3ΔtfbD_temp-25C_od-0.801_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbD promoter grown in CM at 25C until OD600= 0.801 vs NRC-1
587 GSM775843 PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.245_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.245 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.245_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 37C until OD600= 0.245 vs NRC-1
588 GSM775844 PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.506_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.506 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.506_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 37C until OD600= 0.506 vs NRC-1
589 GSM775845 PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.828_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 37C OD600= 0.828 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-37C_od-0.828_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 37C until OD600= 0.828 vs NRC-1
590 GSM775846 PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.205_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.205 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.205_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 25C until OD600= 0.205 vs NRC-1
591 GSM775847 PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.239_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.239 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.239_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 25C until OD600= 0.239 vs NRC-1
592 GSM775848 PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.412_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.412 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.412_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 25C until OD600= 0.412 vs NRC-1
593 GSM775849 PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.819_1 61,477 Institute for Systems Biology 2011-08-10 [Tiling Array] Agilent-030521 Halobacterium sp. NRC-1 Tiling V1 013324 (GPL13426) RNA Halobacterium sp. NRC-1
Halobacterium sp. NRC-1		 unclassified source_name:PtfbE-tfbX in Δura3ΔtfbD knockout at 25C OD600= 0.819 Halobacterium NRC-1 Reference sample title:PtfbE-tfbX/Δura3ΔtfbD_temp-25C_od-0.819_1 description:Halobacterium salinarum NRC-1 Δura3ΔtfbD knockout harboring synthetic tfbX with tfbE promoter grown in CM at 25C until OD600= 0.819 vs NRC-1
594 GSM1032681 MM901 formate-limiting(200 mM sodium formate) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 unclassified source_name:bulk from a mid-log phase culture(OD660=0.804) ss LowFormate noH2 title:MM901 formate-limiting(200 mM sodium formate) rep1 description:Technical replicate 1 of 2
595 GSM1032682 MM901 formate-limiting(200 mM sodium formate) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 unclassified source_name:ss LowFormate noH2 bulk from a mid-log phase culture(OD660=0.804) title:MM901 formate-limiting(200 mM sodium formate) rep2 description:Technical replicate 2 of 2
596 GSM1032683 MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep1
597 GSM1032684 MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-limiting(0.08 mM K2HPO4) rep2
598 GSM1032685 MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep1
599 GSM1032686 MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep2 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) N-limiting(2 mM NH4Cl) rep2
600 GSM1032687 MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep1 62,976 Institute for Systems Biology 2012-11-07 [Tiling Array] Agilent-029364 ISB Mmp 60K 60mer tiling array (GPL15063) RNA Methanococcus maripaludis S2
Methanococcus maripaludis S2		 lymphnode MM901 formate-excess(380 mM sodium formate) P-excess(0.8 mM K2HPO4) N-excess(NH4Cl) rep1
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