Gene Expression Omnibus (GEO) Overview Version:2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(545)
  Primates
(8)
  Rodents
(358)
  Mammals
(33)
  Vertebrates
(31)
  Invertebrates
(73)
  Plants
(202)
  Bacteria
(116)
  Viruses
(0)
  Phages
(0)
  Unclassified
(9)
  All
(1,377)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(30)
  Tiling Array
(7)
  cDNA Array
(24)
  Oligo Array
(53)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(2)
  Other
(0)
  All
(116)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
101 Microarray Analysis of Acid-Stress Induced Changes in EHEC O157:H7 (GSE14069) [Oligo Array] Ryerson University E-coli O157:H7 MWG 7K array version 1 (GPL7001) Ryerson University 2008-12-19 Escherichia coli
Escherichia coli
18,528
(6,176 x 3)
3 by_platform
by_series
102 5448 vs 5448R- in vivo 24h (GSE13656) [Oligo Array] UTHSC/Kotb Streptococcus pyogenes 2.3K v1 (GPL7661) University of Wollongong 2008-11-18 Streptococcus pyogenes
Streptococcus pyogenes
16,296
(2,328 x 7)
7 by_platform
by_series
103 Porphyromonas gingivalis W50 Heme-excess vs Heme-limitation (GSE13375) [Oligo Array] CRC-OHS Porphyromonas gingivalis W83 1977v2 (GPL7531) The University of Melbourne 2008-10-28 Porphyromonas gingivalis
Porphyromonas gingivalis
16,128
(2,688 x 6)
6 by_platform
by_series
104 Dual regulation of nitrogen metabolism by CodY and GlnR in Streptococcus mutans (GSE13540) [GeneChip] Streptococcus mutans UA159 Affymetrix Microarray (GPL4769) OUHSC 2008-11-10 Streptococcus mutans UA159
Streptococcus mutans UA159
15,296
(1,912 x 8)
8 by_platform
by_series
105 12 microarrays for cis-DCE mineralization and new stress genes (GSE13698) [GeneChip] [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array (GPL199) Texas A&M University 2008-11-20 Escherichia coli
Escherichia coli
14,624
(7,312 x 2)
2 by_platform
by_series
106 E. coli BW25113 ompA mutant vs wild type biofilm and E. coli BW25113 ompA/pCA24N_ompA vs ompA/pCA24N suspension cells (GSE14064) [GeneChip] [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array (GPL199) Pennsylvania State University 2008-12-19 Escherichia coli
Escherichia coli
14,624
(7,312 x 2)
2 by_platform
by_series
107 Porphyromonas gingivalis comparative genomic hybridization (GSE13128) [Oligo Array] PFGRC Porphyromonas gingivalis 70 mer oligo array (condensed version) (GPL7447) Ohio State University 2008-10-08 Porphyromonas gingivalis
Porphyromonas gingivalis
14,448
(2,408 x 6)
6 by_platform
by_series
108 Daptomycin stimulon in Bacillus subtilis W168 (GSE13900) [cDNA Array] Sigma Genosys Panorama Bacillus subtilis Gene Array (GPL7420) Cornell University 2008-12-10 Bacillus subtilis
Bacillus subtilis
12,348
(4,116 x 3)
3 by_platform
by_series
109 MESSAGE 2 space experiment with Rhodospirillum rubrum S1H (GSE14239) [Oligo Array] SCKCEN Rhodospirillum rubrum ATCC 11170 Genomic Array (GPL7256) SCK.CEN 2008-12-30 Rhodospirillum rubrum
Rhodospirillum rubrum
11,502
(3,834 x 3)
3 by_platform
by_series
110 BASE-A space experiment with Rhodospirillum rubrum S1H (GSE14241) [Oligo Array] SCKCEN Rhodospirillum rubrum ATCC 11170 Genomic Array (GPL7256) SCK.CEN 2008-12-30 Rhodospirillum rubrum
Rhodospirillum rubrum
11,502
(3,834 x 3)
3 by_platform
by_series
111 Heterologous Microarray Hybridization Between Vesicomyid Symbionts (GSE13447) [GeneChip] HUCMC Ruthia magnifica v1.0 (GPL7552) Harvard University 2008-11-03 Calyptogena magnifica symbiont
Calyptogena magnifica symbiont
8,968
(1,121 x 8)
8 by_platform
by_series
112 Capsule Mediates the Cell Shape of pcsB Mutants in Serotype 2 Streptococcus pneumoniae (GSE13107) [Oligo Array] MWG Streptococcus pneumoniae Array (GPL536) Indiana University 2008-10-07 Streptococcus pneumoniae
Streptococcus pneumoniae
8,448
(2,112 x 4)
4 by_platform
by_series
113 Two-component signal transduction systems in Streptomyces and related organisms (GSE13621) [cDNA Array] Surrey Streptomyces coelicolor array for analysis of two component signal transduction systems (GPL7637) National Yang-Ming University 2008-11-16 Streptomyces coelicolor A3(2),Streptosporangium roseum
Streptomyces coelicolor A3(2),Streptosporangium roseum
2,760
(184 x 15)
15 by_platform
by_series
114 Xylella fastidiosa Study on different growth media (GSE13748) [cDNA Array] UNESP Xylella fastidiosa array version 1 (GPL7554) Max-Delbruck Center for Molecular Medicine 2008-11-26 Xylella fastidiosa
Xylella fastidiosa
1,479
(493 x 3)
3 by_platform
by_series
115 B. anthracis transcriptome analysis using Illumina and SOLiD sequencing (GSE13543) [HT Sequencing] AB SOLiD System (Bacillus anthracis) (GPL9411) Georgia Institute of Technology 2008-11-10 Bacillus anthracis
Bacillus anthracis
6
(0 x 6)
6 by_platform
by_series
116 B. anthracis transcriptome analysis using Illumina and SOLiD sequencing (GSE13543) [HT Sequencing] Illumina Genome Analyzer (Bacillus anthracis) (GPL9410) Georgia Institute of Technology 2008-11-10 Bacillus anthracis
Bacillus anthracis
2
(0 x 2)
2 by_platform
by_series
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