Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(630)		   Tiling Array
(81)		   cDNA Array
(676)		   Oligo Array
(1,413)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(104)		   Other
(11)		   All
(2,920)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 van Kessel STR416 v JV55 (GSE44197) [Oligo Array] Agilent-037644 Vibrio harveyi 15.7K Vharveyi_2011 (GPL16606) Princeton University 2013-02-08 Vibrio harveyi
Vibrio harveyi		 62,976
(15,744 x 4) 		4 by_platform
by_series
22 van Kessel KM808 v JV54 (GSE44198) [Oligo Array] Agilent-037644 Vibrio harveyi 15.7K Vharveyi_2011 (GPL16606) Princeton University 2013-02-08 Vibrio harveyi
Vibrio harveyi		 62,976
(15,744 x 4) 		4 by_platform
by_series
23 van Kessel STR415 v JV54 (GSE44199) [Oligo Array] Agilent-037644 Vibrio harveyi 15.7K Vharveyi_2011 (GPL16606) Princeton University 2013-02-08 Vibrio harveyi
Vibrio harveyi		 62,976
(15,744 x 4) 		4 by_platform
by_series
24 van Kessel BB721 v JAF548 (GSE44153) [Oligo Array] Agilent-037644 Vibrio harveyi 15.7K Vharveyi_2011 (GPL16606) Princeton University 2013-02-07 Vibrio harveyi
Vibrio harveyi		 62,976
(15,744 x 4) 		4 by_platform
by_series
25 SW1 mutant vs. Shewanella piezotolerans WP3 wild-type strain (GSE43882) [cDNA Array] Shewanella piezotolerans WP3 whole genome microarray (GPL16568) Shanghai Jiao Tong University 2013-01-29 Shewanella piezotolerans WP3
Shewanella piezotolerans WP3		 8,986
(4,493 x 2) 		2 by_platform
by_series
26 Gene Expression of F. tularensis LVS in hepatocytic cell line FL83B vs LVS cultured in MH broth (GSE43731) [Oligo Array] JCVI PFGRC Francisella tularensis 12K v1 array designed primarily based on strain Schu4 (GPL4250) Stony brook University 2013-01-24 Francisella tularensis subsp. holarctica LVS
Francisella tularensis subsp. holarctica LVS		 11,324
(2,831 x 4) 		4 by_platform
by_series
27 Expression analysis of Mycobacterium avium subsp. paratuberculosis K-10 within macrophage cell line (GSE43645) [Oligo Array] NimbleGen Mycobacterium avium subsp. paratuberculosis 385k array [090429_Talaat3_60mer] (GPL16529) Oak Ridge National Lab 2013-01-21 Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium avium subsp. paratuberculosis K-10		 43,500
(4,350 x 10) 		8 2 by_platform
by_series
28 Expression data from wild type Sinorhizobium meliloti and mutants in the NSR grown under conditions of high and low nitrogen availability (GSE43570) [GeneChip] [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699 (GPL9757) WSU 2013-01-17 Sinorhizobium meliloti
Sinorhizobium meliloti		 436,487
(22,973 x 19) 		19 by_platform
by_series
29 Reconstruction of the Mycobacterium tuberculosis Regulatory Network and Deconstruction of the Hypoxic Response (GSE43466) [Oligo Array] SBRI_MTuberculosis_12x130K_ver2.0 (GPL14824) Seattle Biomedical Research Institute 2013-01-11 Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv		 858,388
(4,049 x 212) 		212 by_platform
by_series
30 Cellobiose-mediated gene expression in Streptococcus pneumoniae and the repressor function of the novel GntR-type regulator BguR (GSE43345) [Oligo Array] Streptococcus pneumoniae D39 Multiplatform 1909k array (GPL11484) GBB 2013-01-08 Streptococcus pneumoniae D39
Streptococcus pneumoniae D39		 17,181
(1,909 x 9) 		9 by_platform
by_series
31 Streptococcus pneumoniae bguR mutant vs wild-type D39 (GSE43342) [Oligo Array] Streptococcus pneumoniae D39 Multiplatform 1909k array (GPL11484) GBB 2013-01-08 Streptococcus pneumoniae D39
Streptococcus pneumoniae D39		 5,727
(1,909 x 3) 		3 by_platform
by_series
32 Cellobiose vs Glucose at time point T1 (GSE43343) [Oligo Array] Streptococcus pneumoniae D39 Multiplatform 1909k array (GPL11484) GBB 2013-01-08 Streptococcus pneumoniae D39
Streptococcus pneumoniae D39		 5,727
(1,909 x 3) 		3 by_platform
by_series
33 Cellobiose vs Glucose at time point T2 (GSE43344) [Oligo Array] Streptococcus pneumoniae D39 Multiplatform 1909k array (GPL11484) GBB 2013-01-08 Streptococcus pneumoniae D39
Streptococcus pneumoniae D39		 5,727
(1,909 x 3) 		3 by_platform
by_series
34 Atypical Enteropathogenic Escherichia coli Virulence Regulation by QseC Quorum Sensing Adrenergic Sensor (GSE43325) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) Butantan Institute 2013-01-07 Escherichia coli O55:H7
Escherichia coli O55:H7		 40,832
(10,208 x 4) 		4 by_platform
by_series
35 Transcriptome of Staphylococcus aureus Response to Spermine (GSE43230) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) Georgia State University 2013-01-02 Staphylococcus aureus subsp. aureus Mu50
Staphylococcus aureus subsp. aureus Mu50		 38,875
(7,775 x 5) 		5 by_platform
by_series
36 The Intracellular Life of Mycobacterium avium subsp. paratuberculosis During Macrophage Stress: A Key Role for the Alternative Sigma Factor, SigH (GSE43182) [HT Sequencing] Illumina HiSeq 2000 (Mycobacterium avium subsp. paratuberculosis K-10) (GPL16429) UW-Madison 2012-12-28 Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium avium subsp. paratuberculosis K-10		 4
(0 x 4) 		4 by_platform
by_series
37 The syp locus of Vibrio salmonicida is necessary for biofilm formation and is regulated by the quorum sensing transcriptional regulator LitR (GSE42996) [Oligo Array] Vibrio salmonicida 5.5K V1.0.1 AROS (GPL9985) University of Tromsoe 2012-12-18 Aliivibrio salmonicida LFI1238
Aliivibrio salmonicida LFI1238		 43,784
(5,473 x 8) 		8 by_platform
by_series
38 V. salmonicida wild type strain LFI1238 and isogenic DlitR mutant grown in suspension in SWT medium (GSE42994) [Oligo Array] Vibrio salmonicida 5.5K V1.0.1 AROS (GPL9985) University of Tromsoe 2012-12-18 Aliivibrio salmonicida LFI1238
Aliivibrio salmonicida LFI1238		 21,892
(5,473 x 4) 		4 by_platform
by_series
39 V. salmonicida wild type strain LFI1238 and isogenic DlitR mutant grown as statical biofilm in SWT medium (GSE42995) [Oligo Array] Vibrio salmonicida 5.5K V1.0.1 AROS (GPL9985) University of Tromsoe 2012-12-18 Aliivibrio salmonicida LFI1238
Aliivibrio salmonicida LFI1238		 21,892
(5,473 x 4) 		4 by_platform
by_series
40 Differential transcription of Geobacter sulfurreducens cells growing with Fe(III) oxide, Mn(IV) oxide or Fe(III) citrate provided as electron acceptor (GSE42920) [Oligo Array] Geobacter sulfurreducens antisense-detecting 12K oligo array (GPL4895) University of Massachusetts Amherst 2012-12-14 Geobacter sulfurreducens
Geobacter sulfurreducens		 150,528
(12,544 x 12) 		12 by_platform
by_series
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