Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(304)
  Primates
(0)
  Rodents
(246)
  Mammals
(18)
  Vertebrates
(11)
  Invertebrates
(39)
  Plants
(97)
  Bacteria
(50)
  Viruses
(0)
  Phages
(0)
  Unclassified
(3)
  All
(769)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(6)
  Tiling Array
(0)
  cDNA Array
(6)
  Oligo Array
(37)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(1)
  Other
(0)
  All
(50)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5 (GSE32921) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-10-12 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
22 Tannic acid (20 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33907) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
23 Tannic acid (160 µg/ mL) treatment effect on transcriptome of Pseudomonas fluorescens Pf-5 (GSE33908) [Oligo Array] JCVI Pseudomonas fluorescens Pf-5 28k v2.0 (GPL7621) Macquarie University 2011-11-23 Pseudomonas fluorescens
Pseudomonas fluorescens
165,888
(27,648 x 6)
6 by_platform
by_series
24 P. aeruginosa PA14 gene expression in artificial sputum medium (ASMDM) (GSE18594) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2009-10-16 Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa UCBPP-PA14
47,200
(5,900 x 8)
8 by_platform
by_series
25 Gene expression in PAO1, clonal AES-1 and non-clonal isolates of Pseudomonas aeruginosa (GSE6122) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2006-10-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa
106,200
(5,900 x 18)
18 by_platform
by_series
26 Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray (GSE28152) [cDNA Array] University of Sydney CombiMatrix 12K PANarray (GPL13324) University of Sydney 2011-03-24 Pseudomonas aeruginosa
Pseudomonas aeruginosa
82,008
(10,251 x 8)
8 by_platform
by_series
27 Gene expression in AES-2 clonal isolates of Pseudomonas aeruginosa (GSE10304) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2008-01-28 Pseudomonas aeruginosa
Pseudomonas aeruginosa
47,200
(5,900 x 8)
8 by_platform
by_series
28 Gene expression in P. aeruginosa cystic fibrosis isolates grown on Nematode Growth Medium (GSE33275) [GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84) University of Sydney 2011-10-27 Pseudomonas aeruginosa
Pseudomonas aeruginosa
47,200
(5,900 x 8)
8 by_platform
by_series
29 Porphyromonas gingivalis W50 Heme-excess vs Heme-limitation (GSE13375) [Oligo Array] CRC-OHS Porphyromonas gingivalis W83 1977v2 (GPL7531) The University of Melbourne 2008-10-28 Porphyromonas gingivalis
Porphyromonas gingivalis
16,128
(2,688 x 6)
6 by_platform
by_series
30 Transcriptomic analysis comparing the spontaneous acapsular strain AL1114 to the parent capsulated strain AL1115 (GSE17686) [Oligo Array] Boyce/Adler_P. multocida_Combi12K_V1.0_2008 (GPL8988) University of Queensland 2009-08-17 Pasteurella multocida
Pasteurella multocida
75,264
(12,544 x 6)
6 by_platform
by_series
31 Oenococcus oeni CGH 11strains vs AWRIB515 (GSE16736) [Oligo Array] AWRI_Oenoccocus_oeni_105kv1.0_016965 (GPL8742) The Australian Wine Research Institute 2009-06-21 Oenococcus oeni
Oenococcus oeni
783,310
(71,210 x 11)
11 by_platform
by_series
32 Expression responses of lineage I and II Listeria monocytogenes strains to low pH and sodium diacetate (GSE11570) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2008-05-28 Listeria monocytogenes
Listeria monocytogenes
45,712
(2,857 x 16)
16 by_platform
by_series
33 Transcriptomic and phenotypic responses of L. monocytogenes with different growth efficiencies under acidic conditions (GSE19918) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2010-01-15 Listeria monocytogenes
Listeria monocytogenes
39,998
(2,857 x 14)
14 by_platform
by_series
34 Differential gene expression of Listeria monocytogenes during high hydrostatic pressure processing (GSE9179) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2007-09-27 Listeria monocytogenes
Listeria monocytogenes
25,713
(2,857 x 9)
9 by_platform
by_series
35 Physiology and genetic activity of Listeria monocytogenes during multi-hurdle stress induced cell death (GSE18796) [Oligo Array] University of Tasmania Listeria monocytogenes 3K (GPL5334) University of Tasmania 2009-10-29 Listeria monocytogenes
Listeria monocytogenes
22,856
(2,857 x 8)
8 by_platform
by_series
36 Transcriptional response of Leptospira interrogans to iron limitation and characterization of putative Fur-like protein (GSE20422) [Oligo Array] AGRF Leptospira interrogans spotted oligo array (GPL10072) Monash University 2010-02-19 Leptospira interrogans
Leptospira interrogans
101,376
(16,896 x 6)
6 by_platform
by_series
37 Phasevarion mediated random switching of gene expression in Helicobacter Pylori (GSE26759) [Oligo Array] Agilent custom Helicobacter pylori AMADID 029597 (GPL11628) University of Queensland 2011-01-20 Helicobacter pylori P12
Helicobacter pylori P12
94,464
(15,744 x 6)
6 by_platform
by_series
38 PatE in transcriptional activation of acid-resistance pathways of enterohemorrhagic Escherichia coli strain EDL933 (GSE36922) [Oligo Array] Agilent-020666 EHEC_EDL933_O157_H7_Antisense (GPL15383) Walter and Eliza Hall Institute 2012-03-29 Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933
251,904
(15,744 x 16)
16 by_platform
by_series
39 The RegR virulence regulon of rabbit specific enteropathogenic Escherichia coli strain E22 (GSE41093) [Oligo Array] Agilent-034214 Ecoli E22 RegA ANTISENSE (GPL16094) Walter and Eliza Hall Institute 2012-09-24 Escherichia coli E22
Escherichia coli E22
125,952
(15,744 x 8)
8 by_platform
by_series
40 Ion transport and osmotic adjustment in E. coli in response to ionic and non-ionic osmotica (GSE12190) [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) University of Tasmania 2008-07-21 Escherichia coli
Escherichia coli
61,248
(10,208 x 6)
6 by_platform
by_series
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