Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Bacteria
(39,082)

Viruses
(1,266)

Phages
(101)

Unclassified
(5,242)

All
(898,944)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

All
(39,082)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(217)

unclassified
(36,324)

all
(39,082)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
21	GSM452202	Salmonella 42C Treatment Rep1-2	1,152	University of Arkansas	2009-09-12	[Oligo Array] Salmonella typhimurium LT2 1.1K (GPL9181)	RNA	Salmonella enterica subsp. enterica serovar Typhimurium	pooled	Isolated from pools of heart and liver from 4-week-old chickens Analyses were performed using Acuity 4.0 software. Slides were normalized using standard settings (ratio based so that the mean of the ratio of means, of all features, were equal to 1.0).
22	GSM452201	Salmonella 42C Treatment Rep1-1	1,152	University of Arkansas	2009-09-12	[Oligo Array] Salmonella typhimurium LT2 1.1K (GPL9181)	RNA	Salmonella enterica subsp. enterica serovar Typhimurium	pooled	Isolated from heart and liver from 4-week-old chickens. Analyses were performed using Acuity 4.0 software. Slides were normalized using standard settings (ratio based so that the mean of the ratio of means, of all features, were equal to 1.0).
23	GSM751111	Plant_vs_Insect-rep6	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
24	GSM751110	Plant_vs_Insect-rep5	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
25	GSM751109	Plant_vs_Insect-rep4	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
26	GSM751108	Plant_vs_Insect-rep3	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
27	GSM751107	Plant_vs_Insect-rep2	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
28	GSM751106	Plant_vs_Insect-rep1	531	The University of Tokyo	2011-06-29	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Phytoplasma grown in garland chrysanthemum Phytoplasma grown in leafhopper
29	GSM723735	Phytoplasma grown in plant Replicate 4	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from 1 month-old plant after inoculation with phytoplasma-infected leafhoppers.
30	GSM723734	Phytoplasma grown in plant Replicate 3	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from 1 month-old plant after inoculation with phytoplasma-infected leafhoppers.
31	GSM723733	Phytoplasma grown in plant Replicate 2	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from 1 month-old plant after inoculation with phytoplasma-infected leafhoppers.
32	GSM723732	Phytoplasma grown in plant Replicate 1	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from 1 month-old plant after inoculation with phytoplasma-infected leafhoppers.
33	GSM723739	Phytoplasma grown in insect Replicate 4	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from thirty-day-old leafhoppers carrying Phytoplasma asteris
34	GSM723738	Phytoplasma grown in insect Replicate 3	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from thirty-day-old leafhoppers carrying Phytoplasma asteris
35	GSM723737	Phytoplasma grown in insect Replicate 2	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from thirty-day-old leafhoppers carrying Phytoplasma asteris
36	GSM723736	Phytoplasma grown in insect Replicate 1	531	The University of Tokyo	2011-05-13	[cDNA Array] Phytoplasma asteris OY-M DNA array (GPL13531)	RNA	Candidatus Phytoplasma asteris	pooled	Total RNA from thirty-day-old leafhoppers carrying Phytoplasma asteris
37	GSM374528	P. syringae pv.phaseolicola NPS3121 responses to bean leaf extract (technical replicate 2)	12,672	Centro de InvestigaciÃƒÂ³n y de Estudios Avanzados del Instituto PolitÃƒÂ©cnico Nacional	2009-02-25	[cDNA Array] Microarray of P. syringae pv phaseolicola NPS3121 (GPL7115)	RNA	Pseudomonas syringae pv. phaseolicola	pooled	P. syringae pv. phaseolicola NPS3121 whith bean leaf extract Pseudomonas syringae pv. phaseolicola NPS3121 whithout bean leaf extract
38	GSM374368	P. syringae pv.phaseolicola NPS3121 responses to bean leaf extract (biological replicate 2)	12,672	Centro de InvestigaciÃƒÂ³n y de Estudios Avanzados del Instituto PolitÃƒÂ©cnico Nacional	2009-02-25	[cDNA Array] Microarray of P. syringae pv phaseolicola NPS3121 (GPL7115)	RNA	Pseudomonas syringae pv. phaseolicola	pooled	P. syringae pv. phaseolicola NPS3121 whith bean leaf extract Pseudomonas syringae pv. phaseolicola NPS3121 whithout bean leaf extract
39	GSM374367	P. syringae pv. phaseolicola NPS3121 with bean leaf extract (technical replicate 1)	12,672	Centro de InvestigaciÃƒÂ³n y de Estudios Avanzados del Instituto PolitÃƒÂ©cnico Nacional	2009-02-25	[cDNA Array] Microarray of P. syringae pv phaseolicola NPS3121 (GPL7115)	RNA	Pseudomonas syringae pv. phaseolicola	pooled	P. syringae pv. phaseolicola NPS3121 with bean pod extract Pseudomonas syringae pv. phaseolicola NPS3121 whithout bean leaf extract
40	GSM374619	P. syringae pv. phaseolicola NPS3121 responses to bean leaf extract (technical replicate 3)	12,672	Centro de InvestigaciÃƒÂ³n y de Estudios Avanzados del Instituto PolitÃƒÂ©cnico Nacional	2009-02-25	[cDNA Array] Microarray of P. syringae pv phaseolicola NPS3121 (GPL7115)	RNA	Pseudomonas syringae pv. phaseolicola	pooled	P. syringae pv. phaseolicola with bean leaf extract P. syringae pv. phaseolicola NPS3121 without bean leaf extract

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