Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,355)		   Tiling Array
(676)		   cDNA Array
(10,532)		   Oligo Array
(19,682)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(729)		   Other
(57)		   All
(39,082)		  
  brain
(118)		   blood
(706)		   connective
(170)		   reproductive
(108)		   muscular
(90)		   digestive
(772)		   liver
(78)		   lung
(251)		   urinary
(19)		   endo/exo-crine
(204)		   embryo
(25)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(217)		   unclassified
(36,324)		   all
(39,082)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
61 GSM791569 Mouse feces 09-42 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 42 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6, 7, 20, 21, 27 and 28 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
62 GSM791559 Mouse feces 09-38 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 38 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2, 3, 16, 17, 23 and 24 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
63 GSM791554 Mouse feces 09-37 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 37 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1, 2, 15, 16, 22 and 23 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
64 GSM791549 Mouse feces 09-35 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 35 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 13, 14, 20 and 21 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
65 GSM791539 Mouse feces 09-28 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 28 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6, 7, 13 and 14 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
66 GSM791529 Mouse feces 09-24 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 24 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2, 3, 9 and 10 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
67 GSM791524 Mouse feces 09-23 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 23 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1, 2, 8 and 9 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
68 GSM791519 Mouse feces 09-21 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 21 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6 and 7 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
69 GSM791509 Mouse feces 09-17 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 17 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2 and 3 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
70 GSM791499 Mouse feces 09-16 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 16 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1 and 2 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
71 GSM791578 Mouse feces 08-C 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 42 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6, 7, 20, 21, 27 and 28 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
72 GSM791568 Mouse feces 08-42 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 42 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6, 7, 20, 21, 27 and 28 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
73 GSM791558 Mouse feces 08-38 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 38 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2, 3, 16, 17, 23 and 24 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
74 GSM791553 Mouse feces 08-37 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 37 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1, 2, 15, 16, 22 and 23 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
75 GSM791548 Mouse feces 08-35 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 35 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 13, 14, 20 and 21 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
76 GSM791538 Mouse feces 08-28 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 28 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6, 7, 13 and 14 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
77 GSM791528 Mouse feces 08-24 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 24 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2, 3, 9 and 10 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
78 GSM791523 Mouse feces 08-23 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 23 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1, 2, 8 and 9 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
79 GSM791518 Mouse feces 08-21 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 21 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 6 and 7 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
80 GSM791508 Mouse feces 08-17 0 Washington University 2011-09-06 [HT Sequencing] Illumina Genome Analyzer II (Bacteria) (GPL11535) SRA Bacteria
Bacteria		 pooled The Bacteria organisms are Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Bacteroides sp. WH2,Bifidobacterium animalis subsp. lactis CNCM I-2494, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Eubacterium rectale ATCC 33656, Faecalibacterium prausnitzii M21/2, Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632,Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519, Lactococcus lactis subsp. cremoris CNCM I-1631, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174, Ruminococcus torques ATCC 27756, and Streptococcus thermophilus CNCM I-1630 DNA isolated from the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 17 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 2 and 3 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).
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