Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL6988 Illumina HumanExon510-Sv1 DNA Analysis BeadChip (HumanExon510Sv1_D) 511,354 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanExon510-Sv1 DNA Analysis BeadChip (HumanExon510Sv1_D), over 510,000 markers to interrogate human genetic variation using SNP and copy number variation (CNV) probes
22 GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) 485,577 Illumina Inc. 2011-05-13 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482), 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore
23 GPL16304 Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0] 485,512 University of British Columbia 2012-11-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0],
24 GPL6985 Illumina HumanCNV370-QuadV3 DNA Analysis BeadChip (HumanCNV370-QuadV3_C) 373,397 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCNV370-QuadV3 DNA Analysis BeadChip (HumanCNV370-QuadV3_C), features more than 380,000 markers, including more than 320,000 uniformly distributed tag SNPs
25 GPL6986 Illumina HumanCNV370-Duov1 DNA Analysis BeadChip (HumanCNV370v1) 370,404 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCNV370-Duov1 DNA Analysis BeadChip (HumanCNV370v1), contains the standard SNP content featured on our HumanHap300-Duo Genotyping BeadChip, with an additional 52,167 markers designed to specifically target nearly 14,000 copy number variant (CNV) regions of the genome, for a total of over 370,000 markers
26 GPL6980 Illumina HumanHap300-Duov2 Genotyping BeadChip (HumanHap300v2_A) 318,237 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap300-Duov2 Genotyping BeadChip (HumanHap300v2_A), over 318,000 tag SNPs derived from Phase I HapMap data
27 GPL5677 HumanHap300-2 v2.0 Genotyping BeadChip 317,503 NCBI/NLM/NIH 2007-07-27 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, HumanHap300-2 v2.0 Genotyping BeadChip, HumanHap300-2 v2.0 Genotyping BeadChip provides genome-wide coverage using >318,000 tag SNPs chosen from the International HapMap Project. The HumanHap300-Duo BeadChip is a two-sample format and contains: • >318,000 tag SNPs derived from the Phase I and II HapMap data, >42,000 of these from Phase II HapMap data. • A higher density of tag SNPs in regions of the genome within 10kb of a gene or in evolutionarily conserved regions. • Approximately 7,300 nsSNPs (non-synonymous amino-acid changing SNPs). • A higher density of SNPs across Major Histocompatibility Complex (MHC) regions. • Higher genomic coverage with fewer SNPs compared to wholegenome genotyping strategies that use randomly selected SNPs. • Approximate 5kb median SNP spacing, providing unprecedented resolution for detecting chromosomal aberrations. • The ability to analyze matched (paired) samples for LOH and DNA copy number analysis applications. • Over 52,000 SNPs in reported copy number variant (CNV) regions1.
28 GPL6979 Illumina HumanHap300v1 Genotyping BeadChip (HumanHap300_(v1.0.0)) 317,503 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap300v1 Genotyping BeadChip (HumanHap300_(v1.0.0)), over 317,000 tagSNP markers derived from the International HapMap Project
29 GPL6083 Illumina HumanHap300 array 312,926 Queensland Institute of Medical Research 2007-11-02 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap300 array, HumanHap300 Genotyping BeadChip provides genome-wide coverage using >318,000 tag SNPs chosen from the International HapMap Project.
30 GPL8855 Illumina HumanCytoSnp-12 Beadchip version 2.0 301,232 NCBI/NLM/NIH 2009-07-14 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCytoSnp-12 Beadchip version 2.0,
31 GPL8856 Illumina HumanCytoSnp-12 Beadchip version 1.0 299,671 NCBI/NLM/NIH 2009-07-14 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCytoSnp-12 Beadchip version 1.0,
32 GPL13829 Illumina HumanCytoSNP-12 v2.1 BeadChip 299,140 NCBI/NLM/NIH 2011-07-06 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCytoSNP-12 v2.1 BeadChip,
33 GPL8864 Illumina Human-1 Genotyping BeadChip 109,365 NCBI/NLM/NIH 2009-07-15 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina Human-1 Genotyping BeadChip,
34 GPL8890 Illumina HumanCNV100W v1.0 BeadChip 95,484 NCBI/NLM/NIH 2009-07-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanCNV100W v1.0 BeadChip,
35 GPL6370 Illumina human-6 v2.0 expression beadchip (extended) 50,173 NCBI/NLM/NIH 2008-01-14 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip (extended),
36 GPL11195 Illumina Human Sentrix-8, ChipID 4403827059 49,424 DKFZ 2010-11-10 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina Human Sentrix-8, ChipID 4403827059,
37 GPL6884 Illumina HumanWG-6 v3.0 expression beadchip 48,803 Illumina Inc. 2008-05-21 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanWG-6 v3.0 expression beadchip, The HumanWG-6 v3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
38 GPL6947 Illumina HumanHT-12 V3.0 expression beadchip 48,803 Illumina Inc. 2008-06-10 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip, The HumanHT-12 V3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
39 GPL6102 Illumina human-6 v2.0 expression beadchip 48,702 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 48,000 transcript probes per sample using the Human-6 v2 beadchip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
40 GPL7363 Illumina HumanWG-6_V2_0_R2 48,702 NCBI/NLM/NIH 2008-09-23 Illumina Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanWG-6_V2_0_R2, Whole genome, 48,000 probes, 6 simultaneous samples, version 2 R2, slight differences compared to V2 R1
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