Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(5)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(2)
  GeneChip
(367)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(138)
  Protein Array
(1)
  Antibody
(24)
  RT-PCR
(128)
  HT-Seq
(0)
  Other
(51)
  All
(3,985)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
41 GPL6370 Illumina human-6 v2.0 expression beadchip (extended) 50,173 NCBI/NLM/NIH 2008-01-14 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip (extended),
42 GPL11195 Illumina Human Sentrix-8, ChipID 4403827059 49,424 DKFZ 2010-11-10 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina Human Sentrix-8, ChipID 4403827059,
43 GPL6884 Illumina HumanWG-6 v3.0 expression beadchip 48,803 Illumina Inc. 2008-05-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanWG-6 v3.0 expression beadchip, The HumanWG-6 v3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
44 GPL6947 Illumina HumanHT-12 V3.0 expression beadchip 48,803 Illumina Inc. 2008-06-10 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip, The HumanHT-12 V3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
45 GPL17518 Illumina HumanHT-12_V3_0_R1_Bioconductor_2.11 48,802 Fondazione IRCCS Istituto Nazionale dei Tumori 2013-07-31 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanHT-12_V3_0_R1_Bioconductor_2.11,
46 GPL18461 Illumina HumanHT-12 V3.0 expression beadchip [HumanHT-12_V3_0_R2_11283641_A] 48,781 NCBI/NLM/NIH 2014-03-24 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip [HumanHT-12_V3_0_R2_11283641_A],
47 GPL6102 Illumina human-6 v2.0 expression beadchip 48,702 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 48,000 transcript probes per sample using the Human-6 v2 beadchip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
48 GPL7363 Illumina HumanWG-6_V2_0_R2 48,702 NCBI/NLM/NIH 2008-09-23 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanWG-6_V2_0_R2, Whole genome, 48,000 probes, 6 simultaneous samples, version 2 R2, slight differences compared to V2 R1
49 GPL10295 Illumina human-6 v2.0 expression beadchip (using nuIDs as identifier) 48,701 Dana-Farber Cancer Institute 2010-04-06 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip (using nuIDs as identifier),
50 GPL13376 Illumina HumanWG-6 v2.0 expression beadchip 48,701 Illumina Inc. 2011-04-06 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanWG-6 v2.0 expression beadchip, Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html HumanWG-6_V2_0_R4_11223189_A.txt
51 GPL6106 Sentrix Human-6 v2 Expression BeadChip 48,701 NCBI/NLM/NIH 2007-11-08 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Sentrix Human-6 v2 Expression BeadChip,
52 GPL13369 Illumina Human Whole-Genome DASL HT 47,323 Perinatology Research Branch 2011-04-05 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina Human Whole-Genome DASL HT,
53 GPL13475 Illumina HumanHT-12 V4.0 expression beadchip 47,323 NCBI/NLM/NIH 2011-04-29 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
54 GPL15988 HumanHT-12 v4 Expression BeadChip (nuID) 47,322 University of Tampere 2012-08-24 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, HumanHT-12 v4 Expression BeadChip (nuID),
55 GPL6097 Illumina human-6 v1.0 expression beadchip 47,296 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina human-6 v1.0 expression beadchip, The Human-6 Expression BeadChip contains six arrays on a single BeadChip, each with >46,000 probes derived from human genes in the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) and UniGene databases. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html.
56 GPL2507 Sentrix Human-6 Expression BeadChip 47,293 Illumina Inc. 2005-06-01 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Sentrix Human-6 Expression BeadChip, The Sentrix Human-6 BeadChip can be used to study expression of over 47,000 human transcripts. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input. Array content is based on RefSeq and additional space is occupied by targets selected from Unigene build 163 and Gnomon databases.
57 GPL7306 Illumina HumanRef-6 Expression BeadChip 47,292 NCI 2008-09-15 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-6 Expression BeadChip, The Sentrix Human-6 BeadChip can be used to study expression of over 47,000 human transcripts. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input. Array content is based on RefSeq and additional space is occupied by targets selected from Unigene build 163 and Gnomon databases.
58 GPL10558 Illumina HumanHT-12 V4.0 expression beadchip 47,231 Illumina Inc. 2010-06-17 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
59 GPL16420 All Illumina Human expression beadchips based on nuID 47,230 The Sanford-Burnham Medical Research Institute 2012-12-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, All Illumina Human expression beadchips based on nuID, This platform pools probe IDs of all Illumina Human expression beadchips based on nuID. nuIDs are defnined based on probe sequence, they are universally unique. Using nuIDs will make data integration and maintenance very easier. See Bioconductor lumi package for more details of nuID annotation.
60 GPL5799 Illumina Human-6 v2 expression beadchip 46,720 Leiden University Medical Center 2007-09-04 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina Human-6 v2 expression beadchip,
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