Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
41 GPL10295 Illumina human-6 v2.0 expression beadchip (using nuIDs as identifier) 48,701 LUMC 2010-04-06 Illumina Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina human-6 v2.0 expression beadchip (using nuIDs as identifier),
42 GPL13376 Illumina HumanWG-6 v2.0 expression beadchip 48,701 Illumina Inc. 2011-04-06 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanWG-6 v2.0 expression beadchip, Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html HumanWG-6_V2_0_R4_11223189_A.txt
43 GPL6106 Sentrix Human-6 v2 Expression BeadChip 48,701 NCBI/NLM/NIH 2007-11-08 Illumina Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Sentrix Human-6 v2 Expression BeadChip,
44 GPL13369 Illumina Human Whole-Genome DASL HT 47,323 Perinatology Research Branch 2011-04-05 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina Human Whole-Genome DASL HT,
45 GPL13475 Illumina HumanHT-12 V4.0 expression beadchip 47,323 NCBI/NLM/NIH 2011-04-29 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
46 GPL15988 HumanHT-12 v4 Expression BeadChip (nuID) 47,322 University of Tampere 2012-08-24 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, HumanHT-12 v4 Expression BeadChip (nuID),
47 GPL6097 Illumina human-6 v1.0 expression beadchip 47,296 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina human-6 v1.0 expression beadchip, The Human-6 Expression BeadChip contains six arrays on a single BeadChip, each with >46,000 probes derived from human genes in the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) and UniGene databases. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html.
48 GPL2507 Sentrix Human-6 Expression BeadChip 47,293 Illumina Inc. 2005-06-01 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Sentrix Human-6 Expression BeadChip, The Sentrix Human-6 BeadChip can be used to study expression of over 47,000 human transcripts. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input. Array content is based on RefSeq and additional space is occupied by targets selected from Unigene build 163 and Gnomon databases.
49 GPL7306 Illumina HumanRef-6 Expression BeadChip 47,292 NCI 2008-09-15 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanRef-6 Expression BeadChip, The Sentrix Human-6 BeadChip can be used to study expression of over 47,000 human transcripts. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input. Array content is based on RefSeq and additional space is occupied by targets selected from Unigene build 163 and Gnomon databases.
50 GPL10558 Illumina HumanHT-12 V4.0 expression beadchip 47,231 Illumina Inc. 2010-06-17 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
51 GPL16420 All Illumina Human expression beadchips based on nuID 47,230 The Sanford-Burnham Medical Research Institute 2012-12-21 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, All Illumina Human expression beadchips based on nuID, This platform pools probe IDs of all Illumina Human expression beadchips based on nuID. nuIDs are defnined based on probe sequence, they are universally unique. Using nuIDs will make data integration and maintenance very easier. See Bioconductor lumi package for more details of nuID annotation.
52 GPL5799 Illumina Human-6 v2 expression beadchip 46,720 Leiden University Medical Center 2007-09-04 Illumina Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina Human-6 v2 expression beadchip,
53 GPL6790 Illumina HumanRef-6 v2.0 expression beadchip 46,718 NCBI/NLM/NIH 2008-04-28 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanRef-6 v2.0 expression beadchip,
54 GPL6171 Wistar Illumina Human V6 Array 46,713 The Wistar Institute 2007-11-20 Illumina Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Wistar Illumina Human V6 Array,
55 GPL7180 LUH Illumina human-6 v2.0 expression beadchip 46,713 Dept of Clinical Genetics 2008-08-18 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, LUH Illumina human-6 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 48,000 transcript probes per sample using the Human-6 v2 beadchip.
56 GPL7350 Aalborg University Illumina human-6 v2.0 expression beadchip 46,713 Aalborg University 2008-09-22 Illumina Inc Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Aalborg University Illumina human-6 v2.0 expression beadchip, The official commercial Illumina human-6 v2.0 expression beadchip is assigned accession number GPL6102. This platform was created to align with Bioconductor normalized data output.
57 GPL8234 Illumina HumanWG6_V2 chip 46,713 Wistar Institute 2009-02-27 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanWG6_V2 chip, This platform lets you assay more than 46,000 transcripts and profile six samples simultaneously on a single HumanWG-6 BeadChip.
58 GPL9184 Illumina/Rockerfeller human 44k array 44,130 Rockefeller University 2009-09-11 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina/Rockerfeller human 44k array,
59 GPL15389 Illumina HumanHT-12 V3.0 expression beadchip 37,846 Mayo Clinic 2012-03-30 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip,
60 GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol) 34,695 NCBI/NLM/NIH 2010-09-10 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip (gene symbol), The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
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