Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(67)
  Primates
(1)
  Rodents
(38)
  Mammals
(3)
  Vertebrates
(10)
  Invertebrates
(67)
  Plants
(49)
  Bacteria
(32)
  Viruses
(0)
  Phages
(0)
  Unclassified
(8)
  All
(275)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(3)
  Tiling Array
(16)
  cDNA Array
(27)
  Oligo Array
(19)
  Bead Array
(1)
  Protein Array
(1)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(67)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL4611 Illumina Human 49K Oligo array (HEEBO-7 set) 49,152 nih 2006-11-29 NHGRI Microarray Core facility Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Illumina Human 49K Oligo array (HEEBO-7 set),
22 GPL4461 SHEW 43,200 Stanford Microarray Database (SMD) 2006-10-17 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHEW,
23 GPL4564 Stanford Human cDNA SHEW 43,200 Harvard Medical School 2006-11-16 Stanford Functional Genomics Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Stanford Human cDNA SHEW,
24 GPL4460 SHGJ 43,008 Stanford Microarray Database (SMD) 2006-10-17 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHGJ,
25 GPL4541 SHGK 43,008 Stanford Microarray Database (SMD) 2006-11-08 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHGK,
26 GPL4626 TumorTest 41,760 Max-Planck-Institute 2006-12-05 MPIMG_BERLIN Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, TumorTest,
27 GPL4640 SHEL 41,664 Stanford University 2006-12-06 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHEL,
28 GPL4459 SHFR 41,472 Stanford Microarray Database (SMD) 2006-10-17 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHFR,
29 GPL4639 SHFM2 41,472 Stanford University 2006-12-06 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHFM2,
30 GPL4595 Bando (Agilent Whole Human Genome Oligo Microarray) 37,170 University of Tokushima 2006-11-28 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Bando (Agilent Whole Human Genome Oligo Microarray), This is a custom representation of Agilent's Whole Human Genome Oligo Microarray. This platform is formatted specifically for this users normalized data and should not be referenced by other users.
31 GPL4608 Qiagen Human V3 35K Oligo array (HV3) 35,328 nih 2006-11-29 NHGRI Microarray Core facility Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Qiagen Human V3 35K Oligo array (HV3),
32 GPL4422 UCSF Hum32k Array 33,024 University of California San Francisco 2006-10-12 UCSF Comprehensive Cancer Center Array Core Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UCSF Hum32k Array, The tilling path array with continuous, overlapping coverage of the genome contains 32,144 mapped BAC clones described in Krzywinski et al. DNA was amplified by ligation mediated PCR and each BAC is represented by a single spot on the array. Krzywinski M, Bosdet I, Smailus D, Chiu R, Mathewson C, Wye N, Barber S, Brown-John M, Chan S, Chand S, Cloutier A, Girn N, Lee D, Masson A, Mayo M, Olson T, Pandoh P, Prabhu AL, Schoenmakers E, Tsai M, Albertson D, Lam W, Choy CO, Osoegawa K, Zhao S, de Jong PJ, Schein J, Jones S, Marra MA: A set of BAC clones spanning the human genome. Nucleic Acids Res 2004, 32:3651-3660.
33 GPL4693 OHU28K-OI-072404-YMD.gal 27,175 Yale University School of Medicine 2006-12-21 Keck Microarray Resource at Yale Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, OHU28K-OI-072404-YMD.gal, A set of 28K Operon Version 2.1 and Version 2.1 upgrade -70 mer oligos. It has 48 pins with 24 columns and 25 rows in each subarrays. ID is Operon ID#.
34 GPL4454 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF 23,597 Karolinska Institutet 2006-10-16 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF, This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the REFSEQ6 version for HGU-133_plus2
35 GPL4685 [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array 22,944 Affymetrix Japan 2006-12-20 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array, HT-HG_U133A (early access version) high-throughput array (Affy part number 520276)
36 GPL4482 3x19plt b 15 7 02 21,417 Institute of Cancer Research 2006-10-25 Cell Transformation Team, Section of Molecular Carcinogenesis, Institute of Cancer Research Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, 3x19plt b 15 7 02, 3x19plt b 15 7 02
37 GPL4419 UCSF 7Hs version 2 human long oligo array 21,341 University of California San Francisco 2006-10-12 UCSF Shared Microarray Facility Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, UCSF 7Hs version 2 human long oligo array, Spotted long oligonucleotide array produced using Operon Human Genome Oligo Set Version 2 probes. This set includes 21329 oligonucleotides (mostly 69-mers) designed based upon representative sequences in build 147 of the human UniGene database. 12 negative control oligos are also included on these arrays.
38 GPL4525 Human 22K long oligo array 21,329 Tsinghua University 2006-11-07 CapitalBio Corp. Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Human 22K long oligo array, This set includes 22k oligonucleotides, mostly 70-mers, designed based upon representative sequences in the human UniGene database.
39 GPL4582 Capitalbio Human 22K oligo array v1.0 21,329 Tsinghua University 2006-11-21 CapitalBio Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Capitalbio Human 22K oligo array v1.0, This set includes 22k oligonucleotides, mostly 70-mers; design based upon representative sequences in the human UniGene database. Catalog# 400010
40 GPL4452 Human 19K Compugen Array spotted in GIS 20,160 Genome Institute of Singapore 2006-10-14 Genome Institute of Singapore Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 19K Compugen Array spotted in GIS,
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