Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,845)
  Primates
(133)
  Rodents
(5,613)
  Mammals
(406)
  Vertebrates
(547)
  Invertebrates
(1,928)
  Plants
(2,576)
  Bacteria
(1,515)
  Viruses
(10)
  Phages
(0)
  Unclassified
(130)
  All
(29,767)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(295)
  Tiling Array
(178)
  cDNA Array
(139)
  Oligo Array
(1,062)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(254)
  Other
(0)
  All
(1,928)
 
  brain
(140)
  blood
(21)
  connective
(18)
  reproductive
(33)
  muscular
(0)
  digestive
(80)
  liver
(0)
  lung
(0)
  urinary
(12)
  endo/exo-crine
(42)
  embryo
(44)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(96)
  unclassified
(1,442)
  all
(1,928)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1781 GSM440229 dpAX1-24-whole organism-2 0 Baylor College of Medicine 2009-08-13 [HT Sequencing] Illumina Genome Analyzer II (Dictyostelium purpureum) (GPL9380) SRA Dictyostelium purpureum
Dictyostelium purpureum
pooled dpAX1 whole organism cell type
1782 GSM440230 dpAX1-48-prespore-1 0 Baylor College of Medicine 2009-08-13 [HT Sequencing] Illumina Genome Analyzer II (Dictyostelium purpureum) (GPL9380) SRA Dictyostelium purpureum
Dictyostelium purpureum
unclassified source_name:dpAX1 prespore cell type title:dpAX1-48-prespore-1 description:dp_dpAX1_prespore_48_1.coverage library selection: total RNA was subjected to one round of PolyA selection on oligo(dT) beads (Dynal)
1783 GSM440231 dpAX1-48-prespore-2 0 Baylor College of Medicine 2009-08-13 [HT Sequencing] Illumina Genome Analyzer II (Dictyostelium purpureum) (GPL9380) SRA Dictyostelium purpureum
Dictyostelium purpureum
unclassified source_name:dpAX1 prespore cell type title:dpAX1-48-prespore-2 description:dp_dpAX1_prespore_48_2.coverage library selection: total RNA was subjected to one round of PolyA selection on oligo(dT) beads (Dynal)
1784 GSM440232 dpAX1-48-prestalk-1 0 Baylor College of Medicine 2009-08-13 [HT Sequencing] Illumina Genome Analyzer II (Dictyostelium purpureum) (GPL9380) SRA Dictyostelium purpureum
Dictyostelium purpureum
unclassified source_name:dpAX1 prestalk cell type title:dpAX1-48-prestalk-1 description:dp_dpAX1_prestalk_48_1.coverage library selection: total RNA was subjected to one round of PolyA selection on oligo(dT) beads (Dynal)
1785 GSM440233 dpAX1-48-prestalk-2 0 Baylor College of Medicine 2009-08-13 [HT Sequencing] Illumina Genome Analyzer II (Dictyostelium purpureum) (GPL9380) SRA Dictyostelium purpureum
Dictyostelium purpureum
unclassified source_name:dpAX1 prestalk cell type title:dpAX1-48-prestalk-2 description:dp_dpAX1_prestalk_48_2.coverage library selection: total RNA was subjected to one round of PolyA selection on oligo(dT) beads (Dynal)
1786 GSM441281 accessibility of Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster
bone Chromatin accessibility in S2 cells as measured by MeDIP-footprint.
1787 GSM441282 accessibility of S2 cells 0 University of Vienna 2009-08-18 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster
bone Chromatin accessibility in Kc cells as measured by MeDIP-footprint.
1788 GSM441283 H3K4me3 in Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [Dm35b_MR] Affymetrix Drosophila Tiling 1.0R Array (GPL5919) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:3K4-ChIP DNA Input DNA title:H3K4me3 in Kc cells description:Tri-methylation of Lysine 4 of Histone H3 in Kc cells.
1789 GSM441284 H3K36me2 in Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [Dm35b_MR] Affymetrix Drosophila Tiling 1.0R Array (GPL5919) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:2K36-ChIP DNA Input DNA title:H3K36me2 in Kc cells description:Di-methylation of Lysine 36 of Histone H3 in Kc cells.
1790 GSM441285 H3K36me3 in Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [Dm35b_MR] Affymetrix Drosophila Tiling 1.0R Array (GPL5919) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:3K36-ChIP DNA Input DNA title:H3K36me3 in Kc cells description:Tri-methylation of Lysine 36 of Histone H3 in Kc cells.
1791 GSM441286 H3K27me3 in Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:3K27-ChIP DNA Input DNA title:H3K27me3 in Kc cells description:Tri-methylation of Lysine 27 of Histone H3 in Kc cells.
1792 GSM441287 H3K9me2 in Kc cells 0 University of Vienna 2009-08-18 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:2K9-ChIP DNA Input DNA title:H3K9me2 in Kc cells description:Di-methylation of Lysine 9 of Histone H3 in Kc cells.
1793 GSM442605 MSL3-TAP ChIP-seq 0 Harvard Medical School 2009-08-19 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:larvae title:MSL3-TAP ChIP-seq description:MSL3-TAP ChIP of TrojantElephant mutant larvae
1794 GSM442606 input 0 Harvard Medical School 2009-08-19 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:larvae title:input description:chromatin input of TrojantElephant mutant larvae
1795 GSM447608 H3K27Ac_s6_ChIPSeq_1 0 University of Chicago 2009-09-01 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:L2 title:H3K27Ac_s6_ChIPSeq_1 description:corresponding input record: GSM400669
1796 GSM449725 Whole body_primary results 0 Southwest University 2009-09-04 [HT Sequencing] Illumina Genome Analyzer II (Bombyx mori) (GPL9151) SRA Bombyx mori
Bombyx mori
pooled whole silkworm body (whole body)
1797 GSM449726 Anterior silkgland_primary results 0 Southwest University 2009-09-04 [HT Sequencing] Illumina Genome Analyzer II (Bombyx mori) (GPL9151) SRA Bombyx mori
Bombyx mori
breast anterior silk glands
1798 GSM449727 Posterior silkgland_primary results 0 Southwest University 2009-09-04 [HT Sequencing] Illumina Genome Analyzer II (Bombyx mori) (GPL9151) SRA Bombyx mori
Bombyx mori
breast posterior silk glands
1799 GSM450972 BG3 small RNAs BioRep-1 TechRep-1 0 Cold Spring Harbor Labs 2009-09-09 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:BG3 title:BG3 small RNAs BioRep-1 TechRep-1 description:20-200 ntds RNA Seq RNAs 20-200 n'tds Stranded, single-ended, 5' bias
1800 GSM450973 BG3 small RNAs BioRep-2 TechRep-1 0 Cold Spring Harbor Labs 2009-09-09 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:BG3 title:BG3 small RNAs BioRep-2 TechRep-1 description:20-200 ntds RNA Seq RNAs 20-200 n'tds Stranded, single-ended, 5' bias
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