Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Mammals
(295)

Vertebrates
(402)

Invertebrates
(1,004)

SAGE RsaI
(0)

MPSS
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(2)

HT-Seq
(76)

Other
(2)

All
(295)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
81	GPL6497	AgResearch Bos taurus Clone Array Print 114	20,736	AgResearch NZ	2008-02-17	AgResearch (NZ) Ltd	Bos taurus	cDNA Array	spotted DNA/cDNA, AgResearch Bos taurus Clone Array Print 114,
82	GPL6507	Solexa sequencing of small RNAs from short-beaked echidna (18-24 nt)	945,309	Cold Spring Harbor Laboratory	2008-02-19	Illumina	Tachyglossus aculeatus	HT Sequencing	other, Solexa sequencing of small RNAs from short-beaked echidna (18-24 nt),
83	GPL6505	Solexa sequencing of small RNAs from platypus (18-24 nt)	596,512	Cold Spring Harbor Laboratory	2008-02-19	Illumina	Ornithorhynchus anatinus	HT Sequencing	other, Solexa sequencing of small RNAs from platypus (18-24 nt),
84	GPL6506	Solexa sequencing of small RNAs from platypus (25-33 nt)	291,060	Cold Spring Harbor Laboratory	2008-02-19	Illumina	Ornithorhynchus anatinus	HT Sequencing	other, Solexa sequencing of small RNAs from platypus (25-33 nt),
85	GPL6523	Tursiops truncatus cDNA Microarray version 2.0	21,168	Medical University South Carolina	2008-02-22	Hollings Marine Laboratory, Genomics Core	Tursiops truncatus	cDNA Array	spotted DNA/cDNA, Tursiops truncatus cDNA Microarray version 2.0,
86	GPL6553	Nimblegen 385K pig array CGH	392,778	Aarhus University, Faculty of Agricultural Sciences	2008-03-06	Nimblegen Systems Inc.	Sus scrofa	Oligo Array	in situ oligonucleotide, Nimblegen 385K pig array CGH, The probes on the array covered part of the chromosomes 4, 7, 14 and 17 for the Sus Scrofa preliminary assembly version 3, August 2007. The sequence data were produced by the Sus Scrofa Sequencing Group at the Sanger Institute. Detailed information about probe design is available in the Nimblegen technical note (see Web Link).
87	GPL6583	MPI_Chen_domestic_dog_Solexa_2007	438,950	MPI molecular genetics	2008-03-14		Canis lupus familiaris	Other	other, MPI_Chen_domestic_dog_Solexa_2007,
88	GPL6694	BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v1	23,232	INRA	2008-04-07	CRB GADIE	Bos taurus	Oligo Array	spotted oligonucleotide, BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v1, spotted oligonucleotide
89	GPL6695	BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v2	23,232	INRA	2008-04-07	CRB GADIE	Bos taurus	Oligo Array	spotted oligonucleotide, BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v2, spotted oligonucleotide
90	GPL6800	Rosetta/Merck Dog 50k v2.0 Array 1 microarray	23,645	Rosetta Inpharmatics / Merck Pharmaceuticals	2008-04-30	Rosetta Inpharmatics / Merck Pharmaceuticals	Canis lupus familiaris	Oligo Array	in situ oligonucleotide, Rosetta/Merck Dog 50k v2.0 Array 1 microarray, Contains 60-mer probes (60-mer).
91	GPL6849	Porcine oligonucleotide microarray version 4 (POM4)	3,600	National Veterinary Institute	2008-05-09	National Veterinary Institute, DTU, Denmark	Sus scrofa	Oligo Array	spotted oligonucleotide, Porcine oligonucleotide microarray version 4 (POM4),
92	GPL6954	OSU RIGUA (Ruminant Immuno-inflammatory Gene Universal Array)	4,096	Instituto de Investigacion en Recursos CinegÃƒÂ©ticos	2008-06-11	Edinburgh Research and Innovation, The University of Edinburgh	Ovis aries	cDNA Array	spotted DNA/cDNA, OSU RIGUA (Ruminant Immuno-inflammatory Gene Universal Array), For additional information please contact Prof. John Hopkins or S. Rhind at The University of Edinburgh
93	GPL7019	Rabbit_embryo_2304	2,304	INRA	2008-07-03	RGS platform of Genopole Toulouse Midi PyrÃƒÂ©nÃƒÂ©es (http://genopole-toulouse.prd.fr/) and UR 444 Cellular Genetics INRA, chemin de Borde Rouge Auzeville, BP 52627, 31326 Castanet-Tolosan cedex, France	Oryctolagus cuniculus	cDNA Array	spotted DNA/cDNA, Rabbit_embryo_2304, 2304 features - 16 blocks (144 spots per block)
94	GPL7053	Agilent-015354 Bovine Oligo Microarray (4x44K) (Feature Number version)	45,220	Agilent Technologies	2008-07-15	Agilent Technologies	Bos taurus	Oligo Array	in situ oligonucleotide, Agilent-015354 Bovine Oligo Microarray (4x44K) (Feature Number version), B. taurus Oligo Microarray Agilent has developed a genome-wide bovine microarray to enable scientists to study gene expression profiling at the global level. Agilent's Bovine Oligo Ã¢â‚¬â€œ 4X44K microarray covers 21,475 unique genes and transcripts of Bos Taurus, two probes for each gene are produced. Oligonucleotides, 60-mers, are synthesized directly on glass slide using the AgilentÃ¢â‚¬â„¢s SurePrint Technology. Arrays of this design have barcodes that begin with 16015354 or 2515354. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9712.
95	GPL7083	Agilent-020908 Oryctolagus cuniculus (Rabbit) Oligo Microarray (Feature Number version)	45,220	Agilent Technologies	2008-07-22	Agilent Technologies	Oryctolagus cuniculus	Oligo Array	in situ oligonucleotide, Agilent-020908 Oryctolagus cuniculus (Rabbit) Oligo Microarray (Feature Number version), O. cuniculus (Rabbit) Oligo Microarray Arrays of this design have barcodes that begin with 16020908 or 2520908. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
96	GPL7151	SLA/Immune Response/NRSP8 Pig 70 mers Oligonucleotides 3.8K + 13.3K v1	19,200	INRA	2008-08-08	CRB GADIE	Sus scrofa	Oligo Array	spotted oligonucleotide, SLA/Immune Response/NRSP8 Pig 70 mers Oligonucleotides 3.8K + 13.3K v1, The oligos set used for this microarray is a mix of the 13,3k generic set from Operon and a 3.8K SLA/Immune response specific set designed by Yu Gao (LREG-INRA) and synthetised by Operon.
97	GPL7198	Rosetta/Merck Dog 44k 1.0 microarray	39,558	Rosetta Inpharmatics / Merck Pharmaceuticals	2008-08-21	Rosetta Inpharmatics / Merck Pharmaceuticals	Canis lupus familiaris	Oligo Array	in situ oligonucleotide, Rosetta/Merck Dog 44k 1.0 microarray, Contains 60-mer probes (60-mer).
98	GPL7417	INRA-BDR Bovine 10k	10,368	INRA	2008-10-02	INRA/UMR Biologie du Developpement et Reproduction	Bos taurus	cDNA Array	spotted DNA/cDNA, INRA-BDR Bovine 10k, (22cmx22cm, Amersham Biosciences) - 3x3 pattern - The 10K custom cDNA membrane developed in our laboratory was used for the experiment. Briefly, the array contained 7.800 EST from term placenta (Everts et al., 2005) and we incremented this set by 2.400 new EST from a cDNA library established on young foetuses and early extra-embryonic tissues. This second library (called BE03) was constructed from mRNA isolated from extra-embryonic tissues of bovine embryos from D14 to D24 of gestation and foetuses (D36 and D64). The BE03 library was normalized and subtracted by the 7.8K set using the protocol from Bento Soares. About 10.000 bacterial clones were sequenced. The sequences were repeat-masked using RepeatMasker (05/05/99) and the clustering was performed by CAP3. The CAP3 assembly resulted into 2.400 new EST. In total, 10.214 unique cDNA were spotted onto Nylon N+ membranes (Amersham Biosciences) with a 3x3 pattern (QBot, Proteigene) at the CRB GADIE platform (INRA, Jouy en Josas, France). The Ã¢â‚¬Å“BE03Ã¢â‚¬Â library is indexed as Lib. 17188 and Lib. 15992 (http://www.ncbi.nlm.nih.gov).
99	GPL7435	Swine Protein-Annotated Oligonucleotide Microarray	20,736	Michigan State University	2008-10-07	Illumina (Oligo synthesis); University of Arizona (Array printing)	Sus scrofa	Oligo Array	spotted oligonucleotide, Swine Protein-Annotated Oligonucleotide Microarray,
100	GPL7501	Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications.	386,428	University of Washington	2008-10-17	Nimblegen	Canis lupus familiaris	Oligo Array	spotted oligonucleotide, Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications., Segmental duplications were computationally identified and then were targeted with 368,360 probes. The remaining available probes were placed in 5kb flanking regions to the segmental duplications (9,278 probes) and in single copy control regions (8,790 probes).

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