Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(333)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(314)
  Bead Array
(0)
  Protein Array
(1)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(970)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer (GSE38011) [Bead Array] Illumina Infinium 20K Canine SNP Beadchip (GPL15578) NHGRI 2012-05-16 Canis lupus familiaris
Canis lupus familiaris
10,599,588
(22,362 x 474)
474 by_platform
by_series
22 Genomic and epigenomic analysis of taurine and indicine cattle (GSE41624) [Oligo Array] Agilent-025320 Bovine Whole Genome Array 400K 9-8-09 (GPL16182) Texas A&M University 2012-10-16 Bos taurus
Bos taurus
10,086,912
(420,288 x 24)
24 by_platform
by_series
23 A Snapshot of Copy Number Variation in the pig genome (GSE10753) [Oligo Array] Nimblegen 385K pig array CGH (GPL6553) Aarhus University, Faculty of Agricultural Sciences 2008-03-06 Sus scrofa
Sus scrofa domestica
9,426,672
(392,778 x 24)
24 by_platform
by_series
24 Genome-wide CNVs within and between breeds (GSE26170) [Oligo Array] NimbleGen Dog 137K 12plex CGH array (090529_CanFam_TN_CGH) (GPL11333) University of Washington 2010-12-18 Canis lupus familiaris
Canis lupus familiaris
8,763,456
(136,929 x 64)
64 by_platform
by_series
25 Identification of global copy number variations among diverse pig breeds by a CGH array (GSE41488) [Oligo Array] NimbleGen pig CGH array (GPL16165) Huazhong Agricultural University 2012-10-10 Sus scrofa
Sus scrofa domestica
8,632,032
(719,336 x 12)
12 by_platform
by_series
26 Genome-wide detection by array CGH of copy number variations among diverse horse breeds (GSE52504) [Tiling Array] NimbleGen Horse CGH 3x1.4M Whole-Genome Tiling Array [121114_EquCab2_SW_CGH_UX3] (GPL17952) College of Life Sciences Chinese Inner Mongolia Agricultural University 2013-11-19 Equus caballus
Equus caballus
8,414,754
(1,402,459 x 6)
6 by_platform
by_series
27 Comparative Placental Efficiency in Swine Examined Using Expression Profiling (GSE10441) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-07 Sus scrofa
Sus scrofa domestica
7,969,050
(265,635 x 30)
30 by_platform
by_series
28 An atlas of mRNA expression in pig adipose and muscle tissues (GSE30343) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Sichuan Agricultural University 2011-06-30 Sus scrofa
Sus scrofa domestica
7,848,540
(43,603 x 180)
108 36 36 by_platform
by_series
29 Identification of copy number variants in horses (GSE32702) [Oligo Array] Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 (GPL14675) Texas A&M University 2011-10-07 Equus caballus
Equus caballus
7,565,184
(420,288 x 18)
18 by_platform
by_series
30 Canine CNVs associated with canFam2 segmental duplications (GSE13266) [Oligo Array] Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications. (GPL7501) University of Washington 2008-10-17 Canis lupus familiaris
Canis lupus familiaris
7,342,132
(386,428 x 19)
19 by_platform
by_series
31 The impact of breed genotype and tissue compartment on the response of pig macrophages to lipopolysaccharide (GSE45145) [GeneChip] [SNOWBALLs520824F] Affymetrix Porcine Snowball Array (GPL16569) Institute for Molecular Bioscience 2013-03-13 Sus scrofa
Sus scrofa domestica
6,698,300
(47,845 x 140)
140 by_platform
by_series
32 De novo copy number variations in cloned dogs (Nimblegen) (GSE49092) [Oligo Array] IRCGP Canine 720K v1.0 (GPL17479) Catholic University of Korea 2013-07-22 Canis lupus familiaris
Canis lupus familiaris
6,474,510
(719,390 x 9)
9 by_platform
by_series
33 De novo copy number variations in cloned dogs (GSE49357) [Oligo Array] IRCGP Canine 720K v1.0 (GPL17479) Catholic University of Korea 2013-07-30 Canis lupus familiaris
Canis lupus familiaris
6,474,510
(719,390 x 9)
9 by_platform
by_series
34 Gene expression profiles in liver of pigs with extreme high and low levels of androstenone. (GSE11073) [cDNA Array] DJF Pig 55K v1 (GPL6173) Aarhus University, Faculty of Agricultural Sciences 2008-04-05 Sus scrofa
Sus scrofa domestica
6,436,608
(55,488 x 116)
116 by_platform
by_series
35 Tissue-Specific Transcriptional Profiling of Epigenetic Asymmetry in Porcine Parthenogenetic Fetuses1 (GSE10443) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-07 Sus scrofa
Sus scrofa domestica
6,375,240
(265,635 x 24)
5 8 6 5 by_platform
by_series
36 Transcriptional response to tetanus toxoid in pigs with divergent humoral and lean growth performance (GSE47845) [GeneChip] [SNOWBALLs520824F] Affymetrix Porcine Snowball Array (GPL16569) Leibniz Institute for Farm Animal Biology (FBN) 2013-06-11 Sus scrofa
Sus scrofa domestica
5,358,640
(47,845 x 112)
112 by_platform
by_series
37 Gene expression during testis development in Duroc boars (GSE39322) [cDNA Array] DJF Pig 55K v1 (GPL6173) University of Aarhus 2012-07-13 Sus scrofa
Sus scrofa domestica
5,049,408
(55,488 x 91)
91 by_platform
by_series
38 Gene expression data from muscle sample of pig commercial herd Pix(DLxDE). (GSE32112) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2011-09-14 Sus scrofa
Sus scrofa domestica
4,993,461
(24,123 x 207)
207 by_platform
by_series
39 Gene expression in Longissimus lumborum in pig using the GenmascqChip (custom 15K Agilent microarray) (GSE28714) [Oligo Array] [Agilent-019442] Agilent/INRA FH Sus scrofa 15K muscle array [Probe Name version] (GPL11445) INRA 2011-04-19 Sus scrofa
Sus scrofa domestica
4,942,600
(15,208 x 325)
325 by_platform
by_series
40 Transcriptional profiling of six normal Angus tissues (GSE23837) [Oligo Array] BOMC Bovine 25K v1.0 (GPL8813) University of Minnesota 2010-08-26 Bos taurus
Bos taurus
4,320,000
(30,000 x 144)
48 24 24 48 by_platform
by_series
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