Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(37)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(10)
  GeneChip
(92)
  Tiling Array
(241)
  cDNA Array
(573)
  Oligo Array
(906)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(596)
  Other
(26)
  All
(2,490)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1861 GPL4079 PulseChip 2 727 USDA-ARS, NC State University 2006-08-10 RMIT University, School of Applied Sciences, Bundoora AUSTRALIA Cicer arietinum,Lathyrus sativus
Cicer arietinum,Lathyrus sativus
cDNA Array spotted DNA/cDNA, PulseChip 2,
1862 GPL5690 Ecole Normale Superieure/Lopez_Phaeodactylum tricornutum_7K_v1.0 701 J. Craig Venter Institute 2007-07-31 Ecole Normale Superieure/Bowler Phaeodactylum tricornutum
Phaeodactylum tricornutum
Oligo Array spotted oligonucleotide, Ecole Normale Superieure/Lopez_Phaeodactylum tricornutum_7K_v1.0,
1863 GPL2543 18O Isotopic Labeling of Plasma Membrane 658 University of Wisconsin 2005-06-14 Arabidopsis thaliana
Arabidopsis thaliana
Other MS, 18O Isotopic Labeling of Plasma Membrane, An isotopic labeling experiment designed to identifiy plasma membrane proteins. Fractions from a two-phase partitioning experiment are labeled using natural abundance or 18O enriched water to compare the PM enriched fraction to the PM-depleted microsomal fraction.
1864 GPL14998 UMN AtDEFL 1.0 656 Universtiy of Minnesota 2011-12-13 Affymetrix Inc. Arabidopsis thaliana
Arabidopsis thaliana
GeneChip in situ oligonucleotide, UMN AtDEFL 1.0,
1865 GPL3638 The miniarray (Arabidopsis Pathoarray) 464_001 576 National Institute for Basic Biology 2006-04-06 Stanford Functional Genomics Facility Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array spotted oligonucleotide, The miniarray (Arabidopsis Pathoarray) 464_001, This set includes 576 oligonucleotides, 50 to 70-mers, consisting of 464 Arabidopsis pathogen-responsive and 107 Arabidopsis normalization genes and 5 arbitrary spiked-controls. Each feature contains 0.9mg/ml of oligonucleotide above and 0.25mg/ml of calibration oligonucleotide.
1866 GPL4315 Rice WRKY-custom oligo array 576 University of Milan 2006-09-13 Eurogentec Oryza sativa Japonica Group
Oryza sativa Japonica Group
Oligo Array spotted oligonucleotide, Rice WRKY-custom oligo array, This set includes 144 oligonucleotides, 60-mers, generally designed on a gene-specific sequence in the 3'-UTR of WRKY genes.
1867 GPL5422 IFTC Saccharomyces cerevisiae 154 v1.0 576 Helmholtz-Centre for Environmental Research - UFZ 2007-06-22 Working group "Chiptechnology" at the Institute of Technical Chemistry of the University of Hanover, Germany Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array spotted oligonucleotide, IFTC Saccharomyces cerevisiae 154 v1.0, The microarray presents 154 oligonucleotides (70mer) in triplicate encoding for selected proteins of the G1- and S-phase from the cell cycle of S. cerevisiae as well as selected oligonucleotides encoding for proteins belonging to the various metabolic pathways, glucose transporters and flocculins of S. cerevisiae.
1868 GPL7145 IFTC Saccharomyces cerevisiae 154 v1.0 576 Helmholtz-Centre for Environmental Research - UFZ 2008-08-07 Working group "Chiptechnology" at the Institute of Technical Chemistry of the Leibniz University of Hanover, Germany Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array spotted oligonucleotide, IFTC Saccharomyces cerevisiae 154 v1.0, The microarray presents 154 oligonucleotides (70mer) in triplicate encoding for selected proteins of the G1- and S-phase from the cell cycle of S. cerevisiae as well as selected oligonucleotides encoding for proteins belonging to the various metabolic pathways, glucose transporters and flocculins of S. cerevisiae.
1869 GPL5745 KARC Schizosaccharomyces pombe CEN array 536 National Institute of Information and Communications Technology 2007-08-15 National Institute of Information and Communications Technology, and Japan Science and Technology Agency Schizosaccharomyces pombe
Schizosaccharomyces pombe
cDNA Array spotted DNA/cDNA, KARC Schizosaccharomyces pombe CEN array, The 534 spots included: 514 spots which correspond to the sense or antisense strands of 257 sequences (ura4, GFP and 255 sequences from cen regions), and 20 negative control spots. ID number 50 and 306 are assigned to the #50 probes that were not included in the array (see the Manufacture Protocol).
1870 GPL11229 SAGE:15:NlaIII:Lentinula edodes 526 2010-11-18 Lentinula edodes
Lentinula edodes
SAGE NlaIII SAGE NlaIII, SAGE:15:NlaIII:Lentinula edodes, This is a virtual platform for SAGE libraries generated for Lentinula edodes using NlaIII as an anchor enzyme.
1871 GPL6574 Histone TAG Array 06A 488 Johns Hopkins Univ School of Medicine 2008-03-11 Agilent Technologies Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array in situ oligonucleotide, Histone TAG Array 06A, Microarray repurposed for profiling a comprehensive barcoded library of synthetic histone mutations expressed in yeast. Each entry is represented by five replicates each of UpTag and DnTag sequences in a microarray originally designed for use in profiling the Yeast Knockout strain collection (Pubmed ID 15994458). Keywords = histone, synthetic, yeast, tag, barcode
1872 GPL6549 UCD AMDandekar CitrusClusteredComplimentHKfinal_1647_12k oligo array 367 University of California, Davis 2008-03-05 CombiMatrix Corporation Citrus sinensis
Citrus sinensis
Oligo Array in situ oligonucleotide, UCD AMDandekar CitrusClusteredComplimentHKfinal_1647_12k oligo array, Probe sequences are included in the raw data files linked to the related Sample records. Gene targets without NCBI accessions in the Platform data table were not submitted to a public sequence database. They were derived from assembly citrus04122004 of the citrus EST database at the Core Genomics Facility (CGF), College of Agricultural and Environmental Sciences at UC Davis (http://cgf.ucdavis.edu/). However, the gene targets of this study are not found in the current assembly curated by CGF. In all but a few cases, targets were contigs assembled from one or more ESTs. In these cases, the sequence identifier given in the Platform data table consists of seven digits, beginning with '104' or '105'. (In the CGF database, these identifiers also contained 'CTG' preceding the seven digits.) Target identifiers that are not seven-digit numbers beginning with '104' or '105' were singletons in the assembly. In the Sample raw data files, the sequence identifier given in the Platform data table, the one associated with the probe, appears in the 'Name' column. In the latter, the beginning and ending positions of the oligo are appended with underscores to the identifier. Expression of 28 target sequences on the array were reported in detail in Goudeau et al. 2008 (doi:10.1016/j.plantsci.2007.11.017). References to contigs in the published article use identifiers with 'S' in place of '104' in the seven-digit identifiers used here. The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features (and identifier annotations eg, oligo sequence, positional information, etc.) is linked as a supplementary file at the foot of this record.
1873 GPL5988 NCSU/FBG_Poplar_miRNA_v1.0 355 North Carolina State University 2007-10-11 CombiMatrix Populus trichocarpa
Populus trichocarpa
Oligo Array in situ oligonucleotide, NCSU/FBG_Poplar_miRNA_v1.0,
1874 GPL8814 Arabidopsis thaliana microRNA 0.35K microarray 351 University of Chicago 2009-07-07 CombiMatrix Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array in situ oligonucleotide, Arabidopsis thaliana microRNA 0.35K microarray,
1875 GPL2665 The Use of a Soybean cDNA Microarray to Assess for Differential Gene Expression in Vicia Species: A Mixed Model Approach 312 University of Illinois at Urbana-Champaign 2005-07-22 Telechem Superamine Slides printed at Keck Center, University of Illinois, Urbana-Champaign Glycine max,Vicia villosa,Vicia pannonica
Glycine max,Vicia villosa,Vicia pannonica
cDNA Array spotted DNA/cDNA, The Use of a Soybean cDNA Microarray to Assess for Differential Gene Expression in Vicia Species: A Mixed Model Approach,
1876 GPL10615 Arabidopsis thaliana 0.3K Sanger miRBase release 12.0 + custom probes 289 University of Queensland 2010-06-25 LC Sciences, Houston Texas. Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array spotted oligonucleotide, Arabidopsis thaliana 0.3K Sanger miRBase release 12.0 + custom probes, A Microfluidic Array Platform was used with μParafloTM Microfluidics Chip by LC Sciences employing the µParaflo® technology.
1877 GPL15813 RMIT University Salvia Subtracted Diversity Array (SDA) 285 RMIT University 2012-07-16 Alexandra Olarte/Edwin Pang/Nitin Mantri, RMIT University Salvia
Salvia
cDNA Array spotted DNA/cDNA, RMIT University Salvia Subtracted Diversity Array (SDA), Specific for all species belonging to the Salvia genus. Only 10 subtracted fragments (clones) were sequenced.
1878 GPL18095 LC Sciences A. thaliana miRNA LC_MRA-1010_miRArabidopsisT_17 263 LC Sciences, LLC 2013-12-19 LC Sciences Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array in situ oligonucleotide, LC Sciences A. thaliana miRNA LC_MRA-1010_miRArabidopsisT_17,
1879 GPL2092 GeneXp BioGrid_poplar maturation 240 Oregon State University 2005-05-17 Populus
Populus
Oligo Array spotted oligonucleotide, GeneXp BioGrid_poplar maturation, Single channel oligonucletide array for comparing gene expression among 16 tissue types to explore maturation and flowering in poplar Keywords = poplar maturation
1880 GPL337 RNA Processing 226 University of Toronto 2003-06-12 Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, RNA Processing, Home-made polylysine substrate (J. DeRisi protocol) Hedge et al., 2000 spotting, cross-linking and blocking protocol, Virtek spotter, Stealth pins (TeleChem), 8 replicates of each spot per array, Oligonucleotide spike-in controls
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