Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(33)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(58)
  GeneChip
(1,932)
  Tiling Array
(758)
  cDNA Array
(1,617)
  Oligo Array
(2,013)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(1,165)
  Other
(20)
  All
(7,611)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - mRNA-seq (GSE34655) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana
16
(0 x 16)
16 by_platform
by_series
22 Multidimensional regulation in transcriptome during sexual development in Neurospora crassa revealed with RNA sequencing (GSE41484) [HT Sequencing] Illumina HiSeq 2000 (Neurospora crassa) (GPL16164) Yale University 2012-10-10 Neurospora crassa
Neurospora crassa
16
(0 x 16)
16 by_platform
by_series
23 Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize (GSE15286) [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) Yale University 2009-03-18 Zea mays
Zea mays
14
(0 x 14)
7 7 by_platform
by_series
24 Centromere-Like Regions in Budding Yeast (GSE31466) [HT Sequencing] Illumina Genome Analyzer II (Saccharomyces cerevisiae) (GPL9377) Yale University 2011-08-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae
13
(0 x 13)
13 by_platform
by_series
25 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - small RNA-seq (GSE34656) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana
12
(0 x 12)
12 by_platform
by_series
26 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - Bisulfite-seq (GSE34657) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana
12
(0 x 12)
12 by_platform
by_series
27 High-thoughput Illumina RNA sequencing to identify downstream target genes of RABBIT EARS (RBE) in the flowers of Arabidopsis thaliana (GSE36469) [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) Yale University 2012-03-13 Arabidopsis thaliana
Arabidopsis thaliana
8
(0 x 8)
8 by_platform
by_series
28 Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations: RNA-Seq (GSE24970) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2010-10-27 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
29 Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations (GSE24974) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2010-10-27 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
30 A Genome-Wide Characterization of New and Drought Stress Responsive MicroRNAs in Populus euphratica (GSE25747) [HT Sequencing] Illumina Genome Analyzer (Populus euphratica) (GPL11262) Yale University 2010-12-01 Populus euphratica
Populus euphratica
2
(0 x 2)
2 by_platform
by_series
31 ChIP-Seq data from Arabidopsis thaliana under dark and far-red light (GSE30711) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-07-15 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
32 Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development (GSE30713) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-07-15 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
33 The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (GSE11209) [HT Sequencing] Yale-Illumina-Yeast-RNA-Seq (GPL6750) Yale University 2008-04-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1
(0 x 1)
1 by_platform
by_series
34 Genome-wide analysis rice transcriptional change during the early stages of false smut formation caused by Ustilaginoidea virens (GSE39049) [HT Sequencing] Illumina HiSeq 2000 (Oryza sativa Indica Group) (GPL14553) Wuhan University 2012-07-02 Oryza sativa Indica Group
Oryza sativa Indica Group
8
(0 x 8)
8 by_platform
by_series
35 Genome-wide analysis rice transcriptional change during the early stages of false smut formation caused by Ustilaginoidea virens [set A] (GSE32010) [HT Sequencing] Illumina HiSeq 2000 (Oryza sativa Indica Group) (GPL14553) Wuhan University 2011-09-08 Oryza sativa Indica Group
Oryza sativa Indica Group
4
(0 x 4)
4 by_platform
by_series
36 Genome-wide analysis rice transcriptional change during the early stages of false smut formation caused by Ustilaginoidea virens [2011]. (GSE39048) [HT Sequencing] Illumina HiSeq 2000 (Oryza sativa Indica Group) (GPL14553) Wuhan University 2012-07-02 Oryza sativa Indica Group
Oryza sativa Indica Group
4
(0 x 4)
4 by_platform
by_series
37 Identifying reference genes with stable expression from high throughput sequence data (GSE40509) [HT Sequencing] Illumina HiSeq 2000 (Thalassiosira pseudonana CCMP1335) (GPL16011) Woods Hole Oceanographic Institution 2012-08-30 Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
4
(0 x 4)
4 by_platform
by_series
38 Fast forward genetics: mutation mapping and identification using next-generation sequencing and enrichment of bulk segregant pools (GSE24511) [HT Sequencing] AB SOLiD System 3.0 (Arabidopsis thaliana) (GPL10088) Wilhelmina Children's Hospital, University Medical Center Utrecht 2010-10-04 Arabidopsis thaliana
Arabidopsis thaliana
8
(0 x 8)
8 by_platform
by_series
39 Fast forward genetics: mutation mapping and identification using next-generation sequencing and enrichment of bulk segregant pools (GSE24511) [HT Sequencing] AB SOLiD System 2.0 (Arabidopsis thaliana) (GPL10272) Wilhelmina Children's Hospital, University Medical Center Utrecht 2010-10-04 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
40 High-throughput sequencing of small RNAs from Arabidopsis thaliana (GSE5228) [HT Sequencing] Arabidopsis thaliana high-throughput small RNA sequencing (GPL3968) Whitehead Institute for Biomedical Research, MIT Department of Biology 2006-07-04 Arabidopsis thaliana
Arabidopsis thaliana
1,360,456
(340,114 x 4)
1 1 1 1 by_platform
by_series
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