Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(33)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(58)
  GeneChip
(1,932)
  Tiling Array
(758)
  cDNA Array
(1,617)
  Oligo Array
(2,013)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(1,165)
  Other
(20)
  All
(7,611)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
41 H3 ChIP-chip (GSE7062) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-02-17 Arabidopsis thaliana
Arabidopsis thaliana
24,738,880
(6,184,720 x 4)
4 by_platform
by_series
42 Input DNA (GSE7063) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-02-17 Arabidopsis thaliana
Arabidopsis thaliana
24,738,880
(6,184,720 x 4)
4 by_platform
by_series
43 H3K27me3 ChIP-chip (GSE7064) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-02-17 Arabidopsis thaliana
Arabidopsis thaliana
24,738,880
(6,184,720 x 4)
4 by_platform
by_series
44 CLF Pulldown (GSE7065) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-02-17 Arabidopsis thaliana
Arabidopsis thaliana
24,738,880
(6,184,720 x 4)
4 by_platform
by_series
45 Genomic DNA concentration series in Allele Specific Expression study (GSE16503) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 1 (GPL8655) University of Chicago 2009-06-08 Arabidopsis thaliana
Arabidopsis thaliana
24,342,810
(2,434,281 x 10)
10 by_platform
by_series
46 Allele-specific expression between Arabidopsis genus (GSE29037) [Tiling Array] Arabidopsis thaliana AtSNPtile 1 (GPL13483) Institute for Evolution and Biodiversity 2011-05-03 Arabidopsis thaliana
Arabidopsis thaliana
23,864,064
(994,336 x 24)
4 12 8 by_platform
by_series
47 The plasticity of the grapevine berry transcriptome (GSE41633) [Oligo Array] NimbleGen 090918 Vitus vinifera exp HX12 (GPL13936) University of Verona 2012-10-16 Vitis vinifera
Vitis vinifera
23,831,073
(139,363 x 171)
171 by_platform
by_series
48 The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program (GSE36128) [Oligo Array] NimbleGen 090918 Vitus vinifera exp HX12 (GPL13936) University of Verona 2012-02-28 Vitis vinifera
Vitis vinifera
22,576,806
(139,363 x 162)
9 3 3 12 21 87 18 9 by_platform
by_series
49 eqtl-Identification of expression QTL of ABA response in sunflower (GSE38812) [GeneChip] [SYNG010s520477] Affymetrix Helianthus annuus 94K (GPL10568) transcriptomic platform 2012-06-19 Helianthus annuus
Helianthus annuus
22,347,076
(94,691 x 236)
236 by_platform
by_series
50 Mapping Nucleosome positions in WT and delta isw2 cells (GSE8814) [Tiling Array] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (Sc03b_MR_v04) (GPL6476) FHCRC 2007-08-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae
21,085,712
(2,635,714 x 8)
4 4 by_platform
by_series
51 Becker_etal_SNParray_BSA (GSE25509) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 2 (GPL10855) University of Chicago 2010-11-19 Arabidopsis thaliana
Arabidopsis thaliana
19,342,952
(2,417,869 x 8)
8 by_platform
by_series
52 Maize Comparative Genomic Hybridization (CGH) between B73, Mo17, M0022 (RIL), and M0023 (RIL) (GSE16938) [Oligo Array] NimbleGen Zea Mays 2.1M array (GPL8790) Iowa State University 2009-07-02 Zea mays
Zea mays
19,116,261
(2,124,029 x 9)
9 by_platform
by_series
53 Binding data for nine transcription factors for S. cerevisiae salt response (GSE15639) [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) Yale University 2009-04-10 Saccharomyces cerevisiae
Saccharomyces cerevisiae
18,235,260
(303,921 x 60)
60 by_platform
by_series
54 Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies (GSE27052) [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) University of Western Australia 2011-02-03 Brassica rapa
Brassica rapa
17,862,240
(105,072 x 170)
170 by_platform
by_series
55 Genome-wide Analysis of Mono-, Di- and Trimethylation of Histone H3 Lysine 4 in Arabidopsis thaliana (GSE13613) [Tiling Array] Arabidopsis thaliana genome tiling 1.0R array (GPL7639) UCLA 2008-11-14 Arabidopsis thaliana
Arabidopsis thaliana
17,257,194
(2,876,199 x 6)
6 by_platform
by_series
56 Establishing a reference epigenome in arabidopsis seedlings (GSE24710) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling array [HD2.3X] (GPL11005) Institut de Biologie de l'Ecole Normale Supérieure 2010-10-14 Arabidopsis thaliana
Arabidopsis thaliana
17,071,680
(711,320 x 24)
24 by_platform
by_series
57 Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27 (GSE39456) [Oligo Array] NimbleGen 3x1.4M Maize Methylation Array (GPL15621) University of Minnesota 2012-07-18 Zea mays
Zea mays
16,811,856
(1,400,988 x 12)
2 2 8 by_platform
by_series
58 Genome-wide gene expression atlas of maize inbred line B73 (GSE27004) [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) Iowa State University 2011-02-01 Zea mays
Zea mays
16,648,560
(92,492 x 180)
39 12 18 78 33 by_platform
by_series
59 Monitoring Homology Search during DNA Double-Strand Break Repair in vivo (GSE44844) [Tiling Array] 100304 Scer2 MS Chip Stefan Jentsch MPI Biochemistry S.cerevisiae 135K Tiling Array Version 2 (GPL16746) Max Planck Institute of Biochemistry 2013-03-04 Saccharomyces cerevisiae
Saccharomyces cerevisiae
16,522,094
(135,427 x 122)
122 by_platform
by_series
60 Kin28 Regulates the Transient Association of Mediator with Core Promoters (GSE55402) [Oligo Array] Agilent-034462 Yeast_4x180K (GPL18340) IRCM 2014-02-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae
16,279,200
(180,880 x 90)
90 by_platform
by_series
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